Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00045 ATGGCGACTGCTCTCTTGACCTCCTCTTCGACCACCTTGCTCTGCAGAAACAGAACCACAGAACGCTTCATCTCTTCCTCCTTACCTTCATCGGTTCGCTTCCTCTACCCAAACTTTTCATGCTTCCTTGCCTCCTCCTCCTCCATCTCCATATATCACGCCCACGATGCCTTTGCTTCTTCTACACCGGTATTAAACAGTAGGACTAGGGTTTCAAAAGTTCTCGCTGTCGTCGAAGAAGAACCGGTAACGGCGGCTACGCCGGTAGATGAGGAGAACAGCGAGGATGGTTCGTCTCTAGAATTGAAGCTTCGAGTGAGACCATGTGAACTCTATGTATGCAATCTTCCAAGGAGTTATGACATTTCAGAGCTTCTGGAGCTGTTCAAGCCTTTTGGAACAGTTCAATCGGTTGAGGTTTCACGGAATGCTGACACAGGGTTAAGTCGAGGATGCGGTTATGTCACAATGAGTTCAATCAATGAAGCTAAAGCAGCAATGGCTGCTTTGGATGGCTCTGATGTTGGTGGGCGTGAAATGCGGGTTAGATTTTCGGCAGATATTAATTCTAGGAGGACGAACCTTGAGGCCTTGAATTCGGTGCCTAAGAGGAATATAGTCTTTGAAAGCCCTCATAAAGTTTATGTTGGCAATCTTGCCTGGTCTGTGAGACCCGAAAATTTGAGAGAACATTTTAGCCAATTTGGAACTGTGGTTAGTACAAGAGTACTATATGATCGCAAAGCAGGGAAAAACCGGGTTTATGGGTTTCTTTCCTTCTCTTCAGCTGAAGAGCGTGAGGCTGCAATATCTTCCAATGGAACAGAGTTTCTTGGTCGCTTGATGTTGGTGAGAGACGCCATGAAAAAGAGCGAGCCGTGA 882 0.466 MATALLTSSSTTLLCRNRTTERFISSSLPSSVRFLYPNFSCFLASSSSISIYHAHDAFASSTPVLNSRTRVSKVLAVVEEEPVTAATPVDEENSEDGSSLELKLRVRPCELYVCNLPRSYDISELLELFKPFGTVQSVEVSRNADTGLSRGCGYVTMSSINEAKAAMAALDGSDVGGREMRVRFSADINSRRTNLEALNSVPKRNIVFESPHKVYVGNLAWSVRPENLREHFSQFGTVVSTRVLYDRKAGKNRVYGFLSFSSAEEREAAISSNGTEFLGRLMLVRDAMKKSEP* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00045 293 Gene3D - 67 191 IPR012677 -
Eupl14g00045 293 Gene3D - 192 293 IPR012677 -
Eupl14g00045 293 SUPERFAMILY RNA-binding domain, RBD 107 191 IPR035979 GO:0003676
Eupl14g00045 293 SMART rrm1_1 213 285 IPR000504 GO:0003723
Eupl14g00045 293 SMART rrm1_1 110 183 IPR000504 GO:0003723
Eupl14g00045 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Eupl14g00045 293 PANTHER OS02G0815200 PROTEIN 52 285 - -
Eupl14g00045 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Eupl14g00045 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Eupl14g00045 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Eupl14g00045 293 SUPERFAMILY RNA-binding domain, RBD 206 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00045 Eupl-Chr14 745001 746177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00045 105 292 Eukaryotic Initiation Factors Gene Family AT2G36660 31.633 8.30e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00045 - - tss:122665306 347.051