Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00039 ATGGGTTTCTCTTGTATTTCCGTCAAAGTCGTGTCAAAGCTTGTAAGACACCTACAAGACCTACTAGCCCATGTTAAGTTCATAGTCATAATGGCACTCTCTTCCCTTTCTCAATTCAATCTGTTTGATCAATTGTATGCTCCTCCAGGACATCAAGCCGATGTCGTTTTACCAGCGAATCTCCCTTCTCCGGCATTAGTCCCAGTTCCAGTAACGTTGAGTCCTATTATGTTGGAACCAATCAAGAAGAGGCTTCCAGTAGTAAGATTTGGTGATTTTCTCGATAGATTGGGAGTAACCGAAGACTCTGAGCCACTGATCTGTGTTGTGTGCTTGAGTTTCTTGGAGAGAAATCATGAGATCAGAGAGCTATCAAACTGTTCTCATGTGTTTCATAGAGAGTGCCTGGATAAGTGGATCGATCATTGTCAGATGACATGTCCTTCGTGTAGATGTAAGCTAGTACCAACTCAAGGAGAAAGAGATCCATGGATGGTCGAGAGGATGTACTACCTATTTGGTGAAGATTGGTGA 534 0.4288 MGFSCISVKVVSKLVRHLQDLLAHVKFIVIMALSSLSQFNLFDQLYAPPGHQADVVLPANLPSPALVPVPVTLSPIMLEPIKKRLPVVRFGDFLDRLGVTEDSEPLICVVCLSFLERNHEIRELSNCSHVFHRECLDKWIDHCQMTCPSCRCKLVPTQGERDPWMVERMYYLFGEDW* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00039 177 SMART ring_2 108 150 IPR001841 -
Eupl14g00039 177 ProSiteProfiles Zinc finger RING-type profile. 108 151 IPR001841 -
Eupl14g00039 177 Pfam Ring finger domain 108 151 IPR001841 -
Eupl14g00039 177 SUPERFAMILY RING/U-box 103 165 - -
Eupl14g00039 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 76 159 - -
Eupl14g00039 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00039 Eupl-Chr14 704868 705726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00039 79 176 C3H Transcription Factor Family AT3G43430 40.541 1.59e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00039 - K16281 ming:122060008 166.777