Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00001 ATGATTCCTGTTCGAAAACATCAAAATGAGGCTGAAAATGTGGAAGGGGAGGTGGACATGGTTCTCTCTACTCTGGATTCTGCAGGCATGAGCAACCAAACCGAAATGTGTGACACTGAGAGCCTTCATTTGCATTCTGATGTGGTGACTGTGGATTCTCAAAATGATATGGTTCACTCATCAATAATTAGGCATCCCCTTGAAATTCTAAAACTCATACCATCTTATAACCCTCCCCAAGATATAACTCCATCACAGCCTAAACACAAACCTTCATTGAACCCTCCTCCACAGGGGATTCTAAAAATCAATACGGATGCGGCATGGGATTCTCAGTTTGGTAAATCTGGTTTGGGCTTTATTGTGAGAGATTTCAATGTTCCTCACAACATTTTGAAGTCTTCCAGACTTTTCGATCTCCAGGGGTTGTTGTCGTCGTTGCTGCTGCTCGATCCTTCCTTCCATGATCTACGACGATTGCTTCGGTGGATGCCTTTTGCAGCAGCGAAGAAGCTAAGGACTCAATTTCATTGGTCATGGGCCGAAGCAACATGGTATGGAAGTCCCAATGGTGCTGGAAGTGATGGTGGAGCTTGTGGGTATGGGAGTGTCGTAGAACAAGCTCCTTTCTCTTCTATGATATCAGCCGGAGGCCCTTCTCTTTTTAAGTCCGGCAAAGGTTGTGGGGCTTGTTATCAGGTGAGATGTACGGGCAATTCAGCATGTTCGGGGAATCCAGTAAGGGTAGTGATTACGGACGAGTGCCTTGGGGGTCCAAGTCTCTCGAAATCAGCTCATTTTGATTTAAGTGGAACTGCATTCGGAGCTATGGCAATTTCTGGCAAAGGCGATAAACTACGTAATGCAGGTGTGCTGCAGATACAATATCAACGTGTTAATTGCGACTATCCAGGCATGACTGTAGCGTTTCACATTGATGCCGGCTCCAACCACAACTACTTTGCCAGTGTAATTGAATACGAAGACGGAGATGGTGACCTTGCCGCTGTTGATCTCCGAGAAGCTTTGGATTCAAATATGTGGCAACCCATGCAGCAATTGTGGGGTGCGGTCTGGAAGCTGAACTCTGGCTCTGAGTTGCGAGCTCCGTTCTCTCTTCGGCTGAAGGCCCTTGAATCAGGCAAGACGCTTGTGGCAAGTAACGTGATTCCGGCCGGGTGGAAGCCCGGCGTTACTTATCGATCAGTTGTCAATTTTAAACACTAG 1227 0.4686 MIPVRKHQNEAENVEGEVDMVLSTLDSAGMSNQTEMCDTESLHLHSDVVTVDSQNDMVHSSIIRHPLEILKLIPSYNPPQDITPSQPKHKPSLNPPPQGILKINTDAAWDSQFGKSGLGFIVRDFNVPHNILKSSRLFDLQGLLSSLLLLDPSFHDLRRLLRWMPFAAAKKLRTQFHWSWAEATWYGSPNGAGSDGGACGYGSVVEQAPFSSMISAGGPSLFKSGKGCGACYQVRCTGNSACSGNPVRVVITDECLGGPSLSKSAHFDLSGTAFGAMAISGKGDKLRNAGVLQIQYQRVNCDYPGMTVAFHIDAGSNHNYFASVIEYEDGDGDLAAVDLREALDSNMWQPMQQLWGAVWKLNSGSELRAPFSLRLKALESGKTLVASNVIPAGWKPGVTYRSVVNFKH* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 289 305 IPR007118 GO:0005576
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 348 362 IPR007118 GO:0005576
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 218 236 IPR007118 GO:0005576
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 195 213 IPR007118 GO:0005576
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 177 192 IPR007118 GO:0005576
Eupl14g00001 408 PRINTS Expansin/Lol pI family signature 388 402 IPR007118 GO:0005576
Eupl14g00001 408 Gene3D - 303 407 IPR036749 -
Eupl14g00001 408 CDD DPBB_EXPB_N 178 301 - -
Eupl14g00001 408 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 319 402 IPR007117 -
Eupl14g00001 408 PRINTS Major pollen allergen Lol pI signature 216 227 IPR005795 GO:0005576|GO:0019953
Eupl14g00001 408 PRINTS Major pollen allergen Lol pI signature 236 246 IPR005795 GO:0005576|GO:0019953
Eupl14g00001 408 PRINTS Major pollen allergen Lol pI signature 357 374 IPR005795 GO:0005576|GO:0019953
Eupl14g00001 408 PRINTS Major pollen allergen Lol pI signature 310 325 IPR005795 GO:0005576|GO:0019953
Eupl14g00001 408 PRINTS Major pollen allergen Lol pI signature 326 341 IPR005795 GO:0005576|GO:0019953
Eupl14g00001 408 MobiDBLite consensus disorder prediction 78 97 - -
Eupl14g00001 408 PANTHER EXPANSIN-B3 162 406 - -
Eupl14g00001 408 Pfam Lytic transglycolase 215 296 IPR009009 -
Eupl14g00001 408 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 196 306 IPR007112 -
Eupl14g00001 408 SMART dpbb_1 214 296 IPR007112 -
Eupl14g00001 408 SUPERFAMILY PHL pollen allergen 307 402 IPR036749 -
Eupl14g00001 408 SUPERFAMILY Barwin-like endoglucanases 174 305 IPR036908 -
Eupl14g00001 408 Gene3D - 164 302 IPR036908 -
Eupl14g00001 408 MobiDBLite consensus disorder prediction 80 94 - -
Eupl14g00001 408 Pfam Expansin C-terminal domain 308 391 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl14g00001 Eupl-Chr14 2096 15184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl14g00001 178 406 Expansin Gene Family AT1G65680 65.502 1.24e-107 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00001 - - nnu:104602353 400.208