Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01932 ATGTCAGTTCTCATTGTGACGAGCTTGGGAGATATCGTTGTAGATTTGCGTACAGATCGCTGCCCCTTAACCACTAAGAACTTCTTGAAGCTCTGCAAGATTAAGTATTTCAATGGCTGTCTATTTCACACAGTTCAGAAGGATTTCACTGCACAGACCGGTGACCCCACTGGAAAGGGCACTGGCGGGGATTCTATCTACAAATTCCTTTATGGCGATCAGGCTCGCTTTTTTGGTGATGAGATACATCCAGATTTGAAGCATTCTAAAATGGGCACTGTTGCTATGGCTACTGCTGGAGAGAATCTTAATGCTTCTCAGTTTTATTTTACACTGCGTGATGACCTTGACTATCTCGATGGGAAACACACTGTGTTTGGGGAGGTTGCAGAAGGTCTGGAGACCTTGACGAGGATAAATGAAGCATATGTGGATGAAAAGGGAAGACCATATAAAAATATCCGAATCAAACACACATATATATTGGATGATCCTTTTGATGATCCTTCCCAGCTTGCAGAGTTAATTCCCGAGGCTTCCCCAGAAGGAAAACCACGGGATGAGATTGATGATGATGTGCGATTGGAAGATGATTGGGTGCCTATGGATGAGCAATTGGGTCCAGCAGAGGTTGAGGAGGTGTTGCGCGCAAAGGAGGCACATTCTAATGCAGTTGTTCTTGAGAGTATTGGAGACATTCCTGATGCTGAGATAAAGCCGCCAGAGAATGTATTATTTGTTTGTAAGCTTAACCCAGTTACTGAAGATGAGGACTTGCATACGATCTTTTCTCGCTTTGGAAATGTAGTATCGGCTGACATAATTCGTGATTATAAGACTGGAGACAGTTTATGCTACGCTTTCATTGAGTTTGAGACCAACGAGGCATGTGAACAAGCATATTTCAAGATGGATAATGCTTTAATTGATGACCGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCTAAATTGTGGTCCCAATACAGGCGTAAAGCAAACCAAACAGGTAAAGCTAAAGGAAGGGGTTGCTTCAAATGCGGTGCTGTTGATCACATCGCCAAGGACTGCACTGGGGGCCCCAGTGCGCAACAACCTCCAAAATACATCTTAAAAGATGAGAACACCCAGCGTGGTGGAGATGATAACTCAAGGTACGAAATGGTGTTTGGAGACACTCCTGCAAGTTCAGAACGGGAGAAGAGACTCCAAGAACACAAAACAGAAGGCCAAACTGAGAATTGGAGGATGGACAAGTGGAGTTCGGAGGACACGAAGCATAGAGATCGTGAAAAGAGAGATTTTACAAGCGATAGACACGATGACACAAGTAAAGGGGACAGAGAGAATGAGGAGAACCGAGAAAGTAAAGGAATTAGACACAGTGGAAGCAGAAGAGGCGAGGAACGTCATGGAGAGAGAGCGGTTAGAGATAAAGAGAATGTCAAGAGACATGATAGTTGTGGAGATGGAAGGGATGAGCGGAGTTATAGAAAGAATAATAGCCAGGGAGACAGGATGGATGAGCGAGATTTAAGAAAAAGATATACTGATAGTTATAGCCATGGAGACAGGAAGGAAAAAAATAGCGAGGGAGACAGGATGGATGAGCGAGATTTTAGAAAGAGATATACTGATAGTTATAGCCATGGAGACAGGAAGGAAAAGCGGGACTCCAGAAAGAGAAGCGGAGATAGTGATGGTAACGATTACTTGGATAGAAGGTACCGAGATGAGAAAAGGAGATGA 1749 0.438 MSVLIVTSLGDIVVDLRTDRCPLTTKNFLKLCKIKYFNGCLFHTVQKDFTAQTGDPTGKGTGGDSIYKFLYGDQARFFGDEIHPDLKHSKMGTVAMATAGENLNASQFYFTLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDEKGRPYKNIRIKHTYILDDPFDDPSQLAELIPEASPEGKPRDEIDDDVRLEDDWVPMDEQLGPAEVEEVLRAKEAHSNAVVLESIGDIPDAEIKPPENVLFVCKLNPVTEDEDLHTIFSRFGNVVSADIIRDYKTGDSLCYAFIEFETNEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKANQTGKAKGRGCFKCGAVDHIAKDCTGGPSAQQPPKYILKDENTQRGGDDNSRYEMVFGDTPASSEREKRLQEHKTEGQTENWRMDKWSSEDTKHRDREKRDFTSDRHDDTSKGDRENEENRESKGIRHSGSRRGEERHGERAVRDKENVKRHDSCGDGRDERSYRKNNSQGDRMDERDLRKRYTDSYSHGDRKEKNSEGDRMDERDFRKRYTDSYSHGDRKEKRDSRKRSGDSDGNDYLDRRYRDEKRR* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01932 582 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 Pfam Zinc knuckle 342 358 IPR001878 GO:0003676|GO:0008270
Eupl13g01932 582 SUPERFAMILY RNA-binding domain, RBD 229 343 IPR035979 GO:0003676
Eupl13g01932 582 Gene3D - 1 173 IPR029000 -
Eupl13g01932 582 MobiDBLite consensus disorder prediction 394 582 - -
Eupl13g01932 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Eupl13g01932 582 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Eupl13g01932 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Eupl13g01932 582 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Eupl13g01932 582 CDD cyclophilin_RRM 4 169 IPR035538 -
Eupl13g01932 582 SMART c2hcfinal6 343 359 IPR001878 GO:0003676|GO:0008270
Eupl13g01932 582 SMART rrm1_1 244 317 IPR000504 GO:0003723
Eupl13g01932 582 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Eupl13g01932 582 Gene3D - 184 323 IPR012677 -
Eupl13g01932 582 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 503 IPR035542 -
Eupl13g01932 582 CDD RRM_PPIL4 240 322 - -
Eupl13g01932 582 Gene3D - 324 381 - -
Eupl13g01932 582 MobiDBLite consensus disorder prediction 357 582 - -
Eupl13g01932 582 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Eupl13g01932 582 ProSiteProfiles Zinc finger CCHC-type profile. 344 357 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01932 Eupl-Chr13 40135541 40175149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01932 7 166 U-box Gene Family AT5G67530 40.000 5.77e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01932 K12735 - nnu:104609474 853.588