Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01929 ATGGAAGGAGCTTCGGGACCTCATAATCCTCGAACTGTGGAAGAAGTTTACCGGGATTTCAAAGGCAGACGCGCTGGCATGATCAAAGCTCTCACTACTGAAGTTGAGAAGTTTTATCAACAATGTGATCCCGAGAAGGAGAACTTGTGTCTGTATGGCCTTCCAAATGAAACATGGGAAGTTAACCTGCCTGCTGAGGAGGTACCTCCTGAGCTCCCTGAGCCAGCACTGGGAATAAATTTTGCTAGGGACGGGATGCAAGAAAGGGAGTGGTTAGCACTAGTTGCTGTTCACAGCGATGCGTGGTTACTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGCTTTGACAAGAATGACAGGAAGAGGCTCTTCCAGATGATGAATGATCTTCCAACTATATTTGAAGTTGTGACTGGGATTGCGAAGAAGCAACCAAGAGAGAAATTGGCAGCCACCCCCAACAGCAGCAGCAAAAGCAAATCAAGTGCGAAGATGCCACCGCGTCAGTCTGAATCCCAGACAAAGGGATCGAAGATGCCACCCCCAAAAGACGAGGATGAGAGTGGGGAAGAAGAGGACGATGAACAGGGGGCCACACTTTGCGGAGCCTGTGGGGATAACTATGCCAACGATGAGTTCTGGATCTGCTGCGATGTGTGCGAGAGATGGTTTCATGGCAAGTGTGTAAAGATCACACCTGCAAGGGCAGAGCACATCAAGCAGTACAAGTGCCCAGCCTGCAGCAACAAGAGGGCAAGAGTCTAA 768 0.4948 MEGASGPHNPRTVEEVYRDFKGRRAGMIKALTTEVEKFYQQCDPEKENLCLYGLPNETWEVNLPAEEVPPELPEPALGINFARDGMQEREWLALVAVHSDAWLLAVAFYFGARFGFDKNDRKRLFQMMNDLPTIFEVVTGIAKKQPREKLAATPNSSSKSKSSAKMPPRQSESQTKGSKMPPPKDEDESGEEEDDEQGATLCGACGDNYANDEFWICCDVCERWFHGKCVKITPARAEHIKQYKCPACSNKRARV* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01929 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Eupl13g01929 255 MobiDBLite consensus disorder prediction 146 197 - -
Eupl13g01929 255 SUPERFAMILY FYVE/PHD zinc finger 191 252 IPR011011 -
Eupl13g01929 255 CDD PHD_AL_plant 201 251 IPR044104 -
Eupl13g01929 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Eupl13g01929 255 Pfam PHD-finger 202 251 IPR019787 -
Eupl13g01929 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Eupl13g01929 255 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Eupl13g01929 255 MobiDBLite consensus disorder prediction 150 178 - -
Eupl13g01929 255 SMART PHD_3 201 249 IPR001965 -
Eupl13g01929 255 PANTHER CPG BINDING PROTEIN 9 254 IPR045104 GO:0006355|GO:0042393
Eupl13g01929 255 FunFam PHD finger alfin-like protein 194 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01929 Eupl-Chr13 39988808 40006109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01929 1 254 Alfin-like Transcription Factor Family AT3G42790 69.685 4.07e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Eupl13g01929 Alfin 3.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01929 K26274 - nnu:104593892 470.7