Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01923 ATGGACCTTTCCAATCAAGAAGGGGAGATTCCAATCCCAATAACCATGGCCAGCACTTTTGTTGGGGGACATAGTCATGGTCATGGGCATGGTCACATGATCCATCATGACCCCCCTCCTCACAACCACATAGTCCCTTCTTCAGCACCCCAACTCTCCTCCAATGGCCCCATCCCTACATCCTTAGAGGACCACATGCCCTACAAGAAGGTGATTAGATACAGGGAGTGCCTCAAGAACCATGCAGCAGCCATGGGTGGAAATGCCACTGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCAGCCTTGAAGCCCTCAAGTGTTCAGCCTGCAACTGCCACAGAAACTTCCACAGGAAAGACATGGAAGGTGAGTCCTCCTCATGTGACTGCTACCACCACCCCCATCTCAACAAAATGGGGAGGAAGGTCATTGTGAGCCACCACAAGGTTTTGGGATCAGAGGCCTTTGGGTACCCTACAGGCACCCTCATCCCTACAAGAGCACCACCACCCCACCAGATGATAATGTCCTACAACTTAGGATCCAACCCTTCAGAGTCTGATGAGCAGGAAGATGGTGTTGGGGTTGCAGTAAGACCACCCCAACCGGTGAAAAAAAGGTTCAGGACCAAGTTCAGCCAAGAACAGAAGGAGAAGATGTTGGCATTTGCAGAAAAGGTTGGGTGGAGGATACAGAAGCAAGAGGAATCTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTCAAGAGGAGAGTCCTTAAGGTGTGGATGCACAACAACAAGCACAGCTTGGCCAAGAAGAATTCTTCTGCTTCTACTACTTGA 834 0.5036 MDLSNQEGEIPIPITMASTFVGGHSHGHGHGHMIHHDPPPHNHIVPSSAPQLSSNGPIPTSLEDHMPYKKVIRYRECLKNHAAAMGGNATDGCGEFMPSGEEGSLEALKCSACNCHRNFHRKDMEGESSSCDCYHHPHLNKMGRKVIVSHHKVLGSEAFGYPTGTLIPTRAPPPHQMIMSYNLGSNPSESDEQEDGVGVAVRPPQPVKKRFRTKFSQEQKEKMLAFAEKVGWRIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHSLAKKNSSASTT* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01923 277 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 74 123 IPR006456 -
Eupl13g01923 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 56 266 - -
Eupl13g01923 277 FunFam Zinc-finger homeodomain protein 2 199 269 - -
Eupl13g01923 277 NCBIfam homeobox domain, ZF-HD class 208 264 IPR006455 -
Eupl13g01923 277 SUPERFAMILY Homeodomain-like 202 269 IPR009057 -
Eupl13g01923 277 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 73 123 IPR006456 -
Eupl13g01923 277 Pfam ZF-HD protein dimerisation region 72 124 IPR006456 -
Eupl13g01923 277 Gene3D - 200 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01923 Eupl-Chr13 39872649 39874745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01923 69 272 ZF-HD Transcription Factor Family AT1G14440 58.447 2.10e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Eupl13g01923 ZF-HD_dimer 7.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01923 - - nnu:104593910 453.751