Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01918 ATGGCGTCGTCGAACGGCGGAGTTCCTCCGGGGTTTCGGTTCCATCCGACGGATGAAGAGCTCCTTCATTATTATTTGAAAAAGAAGATTTCTTTCCAGAAATTCGACCTGGAGGTGATCAGGGAGGTCGATTTGAATAAGATAGAGCCATGGGACTTGCAAGAGAGGTGTAAGATAGGATCTACACCACAGAACGAGTGGTACTTCTTCAGTCACAAGGATAGGAAGTATCCAACGGGTTCGAGGACGAATAGAGCGACGAATGCGGGATTTTGGAAGGCGACGGGTCGGGATAAATGCATCAGGAACACTTTCAAGAAGATCGGTATGAGGAAAACCCTTGTCTTCTACCGAGGGAGAGCCCCCCACGGCCAGAAAACTGACTGGATCATGCACGAGTACCGTCTTGAAGACACCGATGATGCTCAAGGCAATGGCAGTGAGGATGGTTGGGTGGTCTGTCGTGTATTTAAGAAGAAGAATCTATTCAAAGTTGGAAACGAAGGAGGCACAAGCATGGTTGCGGAGCACCAACTCAACAATGCATCGAACAACAACAACCAACCACGTACCCTCACTCTCAGAGACACACAGTATGTACGTAGACCACACAGTACTCATGGTACTGGTCAACAGACGTTCGACTTCTACAAGCAGCCCGAGCTCGGTCTCAATTACACCCACGTGGCAGCTCCTCAATACAACTCCGCCATGCAAGCTCAAAACCTTCTCCAGCAGACTCACAAGCCAATCGGTTACGACTTCTCAAACTTCCCTTCTGACTCTCAAGCCATGGTCAAGCAACTCCTATCAAACCAAAGGGATTGCGACAGCGGAAGCGATAGTCTAGCTGGACAAGTACAATATCAAGCGTGTGAAGCAGGGCTAGAGGTTGGTACGTGCGAACCAAGTCAACAAATGGTGGGAGGAAGAGACCATGAAAGTCTGAATGACTGGGCTATGCTTGACCGTCTGGTAACTTCTCATGGGGGAGCAAATGCTGCATCAGTACCCCAAATAAATCAACTGTCGATCCGTGGAGAGATGGACTTCTGGGGGTACGGGAAGTAA 1071 0.4921 MASSNGGVPPGFRFHPTDEELLHYYLKKKISFQKFDLEVIREVDLNKIEPWDLQERCKIGSTPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRNTFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLEDTDDAQGNGSEDGWVVCRVFKKKNLFKVGNEGGTSMVAEHQLNNASNNNNQPRTLTLRDTQYVRRPHSTHGTGQQTFDFYKQPELGLNYTHVAAPQYNSAMQAQNLLQQTHKPIGYDFSNFPSDSQAMVKQLLSNQRDCDSGSDSLAGQVQYQACEAGLEVGTCEPSQQMVGGRDHESLNDWAMLDRLVTSHGGANAASVPQINQLSIRGEMDFWGYGK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01918 356 FunFam NAC domain-containing protein 17 163 - -
Eupl13g01918 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 241 - -
Eupl13g01918 356 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Eupl13g01918 356 Gene3D NAC domain 17 164 IPR036093 GO:0003677|GO:0006355
Eupl13g01918 356 Pfam No apical meristem (NAM) protein 9 136 IPR003441 GO:0003677|GO:0006355
Eupl13g01918 356 SUPERFAMILY NAC domain 7 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01918 Eupl-Chr13 39827401 39830027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01918 1 353 NAC Transcription Factor Family AT1G33280 52.830 1.09e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl13g01918 NAM 3.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01918 - - nnu:104593929 550.821