Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01909 ATGGCACTCGCCCCTTCAAATCATTCTTCCTCTGGAGGAGGACCTAACCCAGGGGCCTCTGGTGATGTTTTGTACAGGGAACTCTGGCATGCCTGTGCTGGACCCTTGGTCACTGTACCTCGCGAAGGGGAGAGGGTCTACTACTTTCCTCAAGGTCATATGGAACAGCTTGAAGCCACAACACATCAGGGGCTGGATCAGCAGATGCCTTTATTCGATCTGCCATCTAAAATCCTCTGCAAAGTAGTTCATGTTCAGCTTCGGGCTGAACCAGAAACAGATGAGGTCTATGCACAGATAACCCTGATGCCTGATCAAAGTGAAGTTACCAGCCCGGATCTGCCACTTCCGGAACCTCAAAAGTGCACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACAAGCACCCATGGAGGATTCTCTGTTCTTCGGAGGCATGCAGATGATTGCCTGCCGCCTTTGGATATGTCCCAACATCCACCTTGGCAGGAATTGGTTGCCACAGATTTGCACGGAAATGAGTGGCATTTTCGTCATATTTTTCGAGGGCAACCTAGGCGACATCTGCTCACAACTGGGTGGAGTGTCTTTGTTAGTTCCAAGAGGCTAGTAGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAATTGCGTGTTGGAGTAAGGAGGCTCATGAGACAACTAAGCAATATGCCATCATCTGTTATATCCAGCCACAGCATGCATCTTGGGGTCCTTGCTACTGCTTCTCATGCCATAACAACTGGAACTCTCTTCTCTGTCTTCTATAAACCAAGAACAAGTCGGTCTGAGTTTATCATAAGTGTCAACAAATACCTTGAAGCTCAGAACCATAAGCTATCTGTTGGGATGAGGTTTAAGATGAGATTTGAGGGTGAGGAAGCTCCTGAAAGAAGATTCAGTGGTACTATAATTGGCGTTGGAGACACTGCATCATCACGGTGGACAGATTCTGAGTGGAGATCCTTAAAGGTACAATGGGATGAACCTTCATCTATCCCACGTCCAGAAAGAGTTTCGCCGTGGGAGTTGGAACCACTCATGGCGGCTACCCCCTTGACTTCCCAACCAGCACAAAGGAACAAACGGGCTCGACCACCAGTTTTACATTCGCCAACTCCAGAGCTTTCGGTATTTGGTATGTGGAAATCCCCAGTTGAGTCATCTTCGACTTTCTCATATTCTGCTCTACAGAGAGGGCGAGAACCGTATCCATCACCCAATTCAACACCCCTCTTCTCCTCGGTGACAAAAACAAGCACCCTTGGATTTACTGGAAACAGTTCTCCAGCAGCAGTTACCAGCAACCCAGTGTATTGGTCCAATCGAGCAGAAATTCCAACCGAGTCTTTTACCCCAATAACGAATAGAGAGTCTGGCAAAAAGCGGCAGGAAACTGGTAATGGCTGCAGGCTGTTTGGGATTCAGCTGGTCAATAACTTCAATGTGGAGGAAACTTTGCCGGTGGTGACTGTGTCAGTTGGAGTGGGGGAAGATCAGCCGGTTCCATCTTTGGATGCAGACTCTGATCGGCAATCCCAGCCGTCGAATATCAACCGATCTGATATTCCTGCAGTGAGCAGTGAGCCTGAGAAATCATGCCTGAGATCTCCCCAGGAGATGCAAAGCAGGCAAACTCGGAGCTGCACTAAGGTTCACATGCAAGGGATTGCTGTTGGGAGAGCTGTCGACCTGACACGGTTTGATCGGTATGAAGACCTGCTCAGGAAGCTTGAGGAGATGTTTGGCATCGAAGGCGAGCTTTATGGACCTGCCAAGAAATGGCAGGTTGTCTACACAGATGACGAGGATGACATGATGATGGTCGGGGACGACCCTTGGCAGTTAAGTTTGAGCAACCCTTATCTCTTCTGTAATTTCTTTAAAATTATTAGCTGCCTGCAAATTTATTGGAATTCTGGAAATTTTTCTGAACTTCCTAGTATGGAAAATGAAACTCTTAAAATGGGTAAATCTACAGTTGGAGTGTTATGGCAGAACTTTCTGTCTATAACTGCAATATAA 2058 0.4718 MALAPSNHSSSGGGPNPGASGDVLYRELWHACAGPLVTVPREGERVYYFPQGHMEQLEATTHQGLDQQMPLFDLPSKILCKVVHVQLRAEPETDEVYAQITLMPDQSEVTSPDLPLPEPQKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQHPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRLMRQLSNMPSSVISSHSMHLGVLATASHAITTGTLFSVFYKPRTSRSEFIISVNKYLEAQNHKLSVGMRFKMRFEGEEAPERRFSGTIIGVGDTASSRWTDSEWRSLKVQWDEPSSIPRPERVSPWELEPLMAATPLTSQPAQRNKRARPPVLHSPTPELSVFGMWKSPVESSSTFSYSALQRGREPYPSPNSTPLFSSVTKTSTLGFTGNSSPAAVTSNPVYWSNRAEIPTESFTPITNRESGKKRQETGNGCRLFGIQLVNNFNVEETLPVVTVSVGVGEDQPVPSLDADSDRQSQPSNINRSDIPAVSSEPEKSCLRSPQEMQSRQTRSCTKVHMQGIAVGRAVDLTRFDRYEDLLRKLEEMFGIEGELYGPAKKWQVVYTDDEDDMMMVGDDPWQLSLSNPYLFCNFFKIISCLQIYWNSGNFSELPSMENETLKMGKSTVGVLWQNFLSITAI* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01909 685 Gene3D - 553 653 - -
Eupl13g01909 685 Gene3D - 124 229 IPR015300 -
Eupl13g01909 685 MobiDBLite consensus disorder prediction 363 382 - -
Eupl13g01909 685 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Eupl13g01909 685 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl13g01909 685 Gene3D - 290 362 - -
Eupl13g01909 685 FunFam Auxin response factor 125 229 - -
Eupl13g01909 685 Pfam AUX/IAA family 550 593 IPR033389 -
Eupl13g01909 685 MobiDBLite consensus disorder prediction 517 559 - -
Eupl13g01909 685 MobiDBLite consensus disorder prediction 511 559 - -
Eupl13g01909 685 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl13g01909 685 FunFam Auxin response factor 290 362 - -
Eupl13g01909 685 CDD B3_DNA 125 227 IPR003340 GO:0003677
Eupl13g01909 685 SUPERFAMILY CAD & PB1 domains 557 629 - -
Eupl13g01909 685 SMART B3_2 127 229 IPR003340 GO:0003677
Eupl13g01909 685 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Eupl13g01909 685 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Eupl13g01909 685 ProSiteProfiles PB1 domain profile. 558 641 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01909 Eupl-Chr13 39625283 39636077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01909 3 642 B3 DNA Binding Superfamily AT1G59750 69.876 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl13g01909 B3 8.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01909 K14486 - nnu:104593954 1084.71