Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01905 ATGTCTTATAGCTATTCAGATCCACCTAGTTGCTGCTCAACAGCTTCAGCGGAATTGAAACTCTACCAAGCTTTCATATTTTCTATACCAATTTTCTTCACTTTTATCCTCTTATTCTTGTTCTACTTGTTCTACCTTCGACGCCGAAGGGTTGATTGGTCTTCTCTGCGGATGAGGGCACCATACCATAACAATGGGGAACCAGCCCTCCCCAGACTTTCGGAGTCGGGCTTAAAGAAGGAACTTAGAGAGATGCTTCCGATAATCGTATTCAAGGAGAGCTTCTCAATCAGAGATACACAATGCTCAGTATGCCTAGGAGACTACCAAGCTGAGGAAAGGCTTCAACAGATACCCGCATGTGGCCACACTTTTCACATGAGTTGCATTGACCACTGGCTTGCCACCCACACCACTTGTCCTCTCTGCCGCCTCTCCCTTCTTCCGGCTGCCAAAACTGACACTGAACCTCCAGATAATCAACTGGAAGCCCAGGCCAACGAAATACAAACCAACGAGGGATTGTCAGAAGATAGTAATGGAGATGGAAATTCTCTTCGGAGACGGTCCGAAAGAGAGAGTATAGCAGAGGAGGGGGGCAACAATTGTGTAAGTAATGATGAAGAGCTTTGTAATGCAAGGAGAGAAGATGACGAGTGTCAACGAAATGGCGAAGGTTCTGTTATATTTGATGTTGAAGATCATGTTGGTGGTGAGCAAGAGACCATGACAGATCCTAGTGTTCAGCAAGGGAACATGAGAGATCATCCTTAG 774 0.4587 MSYSYSDPPSCCSTASAELKLYQAFIFSIPIFFTFILLFLFYLFYLRRRRVDWSSLRMRAPYHNNGEPALPRLSESGLKKELREMLPIIVFKESFSIRDTQCSVCLGDYQAEERLQQIPACGHTFHMSCIDHWLATHTTCPLCRLSLLPAAKTDTEPPDNQLEAQANEIQTNEGLSEDSNGDGNSLRRRSERESIAEEGGNNCVSNDEELCNARREDDECQRNGEGSVIFDVEDHVGGEQETMTDPSVQQGNMRDHP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01905 257 MobiDBLite consensus disorder prediction 168 257 - -
Eupl13g01905 257 MobiDBLite consensus disorder prediction 182 196 - -
Eupl13g01905 257 Pfam Ring finger domain 101 144 IPR001841 -
Eupl13g01905 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 172 - -
Eupl13g01905 257 SMART ring_2 102 143 IPR001841 -
Eupl13g01905 257 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Eupl13g01905 257 FunFam RING-H2 finger protein ATL7 69 149 - -
Eupl13g01905 257 MobiDBLite consensus disorder prediction 209 240 - -
Eupl13g01905 257 CDD RING-H2_EL5-like 101 144 - -
Eupl13g01905 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 149 IPR013083 -
Eupl13g01905 257 SUPERFAMILY RING/U-box 86 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01905 Eupl-Chr13 39537889 39543522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01905 4 227 C3H Transcription Factor Family AT4G10150 48.548 1.94e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01905 K19039 - nnu:104593963 281.182