Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01897 ATGACGGGAAATCCAGGTTCCACGGTTTATATAGGTAATTTGGATGAGAGGGTTAGTGACAGAGTCTTGTATGAGATTCTTATTCAGGCAGGGCGGGTAGTAGACTTGCACATTCCTCGAGAGAAAGAAACCAATCGACACAAGGGTTATGCCTTTGCGGAATATGAAACCGAGGAGATTGCAGACTATGCAGTCAGACTTTTCTCTGGCCTTGTGAATCTCTACAATAGAACCTTGAGATTTGGGATTTCTAGGCAAGATAAGCCCTCGCAAAACATGTCCACGCCAATCAAGCCCACACTGAACTCATCTCCTAAACTGAAGACTCACCCTGTACAGCTTAACAATGCAGAAACTTCCCAACACTCGGGCAGGTTGTCATCATACCCCCCAAATTATGCACAAGAAGAGCCTTCACCCCCTGGTGTAGTACAACCTAATGGGTATAGATCAGATTTTAATGGCAATTACAGTCGACGGGTTTTTGGAGAGTCGTTGGATAGCATCAGCCGCTCAAATTCAAGCCAGAGACTTTATGATTCCAAAAACCCAATCACTTACCCTTCAAACTGA 573 0.4468 MTGNPGSTVYIGNLDERVSDRVLYEILIQAGRVVDLHIPREKETNRHKGYAFAEYETEEIADYAVRLFSGLVNLYNRTLRFGISRQDKPSQNMSTPIKPTLNSSPKLKTHPVQLNNAETSQHSGRLSSYPPNYAQEEPSPPGVVQPNGYRSDFNGNYSRRVFGESLDSISRSNSSQRLYDSKNPITYPSN* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01897 190 MobiDBLite consensus disorder prediction 86 190 - -
Eupl13g01897 190 Gene3D - 2 97 IPR012677 -
Eupl13g01897 190 MobiDBLite consensus disorder prediction 161 190 - -
Eupl13g01897 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Eupl13g01897 190 SMART rrm1_1 8 82 IPR000504 GO:0003723
Eupl13g01897 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Eupl13g01897 190 CDD RRM1_SF3B4 9 81 IPR034158 -
Eupl13g01897 190 MobiDBLite consensus disorder prediction 86 133 - -
Eupl13g01897 190 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 187 - -
Eupl13g01897 190 SUPERFAMILY RNA-binding domain, RBD 4 93 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01897 Eupl-Chr13 39449230 39455620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01897 7 87 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 1.21e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01897 K12831 - qsu:111991540 234.572