Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl13g01894 | ATGTGTCTTGGAGGCAAAAAGCTGGTGATATTGGGTATTCCCTGGGATGTCGATAGCGAAGGGCTAAGGCTGTATATGAGCCAGTTTGGTGAATTGGTCGATGTTATGGTAATGAAGGATCGTGTGTCAGGACGCTCTCGTGGTTTTGGCTATGTCACGTTTTCCTCTTCAGAAGATGCAAAGAAAGCACTTGCAGCTCAACATATTATGAATGGAAGGACGCTTGAGGTTAAAGTGGCAACTCCAAAGGAGGAAATGGTGTCATCTTCCAAGAAAAGTACTCGCATATTTGTTGCTAGAATACCGCCAAGTGTGACAGATGAAGATTTTCACAGCTATTTCATGAAGTATGGTCCAGTAATAGATGCTTACATGCCAAAGGATCCAGTAAAAAAGCAACATCGAGGGATTGGATTTGTGACTTATGAAGATGCAGACTCAGTAGACCAGCTTATGTCAGAGACTCATGAACTCGGAGGTTCTACAATTGCTGTGGATCGAGCAACTCCAAAGGATTCCAGAGGATATAGGGTTTCAAGCCACAGTCTCAGGACACCACATACTTTCAGAATGTCTAATGTGGTTGGCCATGACAGCACTGAGAGCTATTCGAGAATAGGAACAAGTGAATCTCAAGCCAACGAATTGTTGTCGTCCGTTGTCCATTTGGGCCAAGAGGGTTCTTGTGCAGGACATGTATTGACTGCAGGGGATGCTGGTTCAATTGGGGCTATTAAAGGACAGACTGCTGCAGGTGCTCCTGCAAGAATAGAAAGAAAGATGTTTATTGGCCGTGTTCCTGTGGAAGCTACGTCTGAAGATCTGCAAGCATATTTTAGTCAGTTTGGATGGGTTCTTGATGTTTACCTCCCAAAGGATGCAAAGAAAACATCTCACAGAGGCTTTGGCTTTGTAACATTTGCAGATGAAGCTTCGGCTGCACGTGTTGCTCGCCGTAGACATTTTATTCATGGGCGAGAGATTGCCGTTGACTCTGCGTCTCCAACAGATCGTGCACATGGAGGTGGGCAGATCCCTAGGAATGCATTGCCATCTTTGGGAGGTCAACAGAACCTGCTTCCTTCTGAAGTGTTGATCGGGGCCACAACTGAAAATGACCGTTCCATACAACCATCTACCAGTTCAACTGCTAAGTGGGGAAAGAAACTTTTCATTGGACGCATTCCAATTGAGGCTACTGCTATTGATGTGCGGTTGCACTTCAGTCAGTTTGGCCATGTTTTGGATGTGTATCTACCCAAGGATGACAGGAAGATGTCTCATAGAGGGTTTGGCTTTGTCACATTCGCTGATGAAATTTCAGCTGAATATGCTTCTCAGAAAATACATCGGATTCTAGGACAGAAGATTGTGTTGGATCGTGCAGCTCCCATAGAAAGTGAAGGATTGAGTATAGATCCCTCTTCTTCTATTGTCAGAACCTTAGATGGGTCTATTCTGACACAACAAAGTTTATCCAGTCAGCAAACTTTTGGTTCCGAGTTGACACAGTCTCACGAGGCCACCGATTTGCAGTTGGCACAGTCTCGTGATGCCACCATAAATCGACCCATTAGAACTTCATTGCGGTATAGACCATATTGA | 1605 | 0.4486 | MCLGGKKLVILGIPWDVDSEGLRLYMSQFGELVDVMVMKDRVSGRSRGFGYVTFSSSEDAKKALAAQHIMNGRTLEVKVATPKEEMVSSSKKSTRIFVARIPPSVTDEDFHSYFMKYGPVIDAYMPKDPVKKQHRGIGFVTYEDADSVDQLMSETHELGGSTIAVDRATPKDSRGYRVSSHSLRTPHTFRMSNVVGHDSTESYSRIGTSESQANELLSSVVHLGQEGSCAGHVLTAGDAGSIGAIKGQTAAGAPARIERKMFIGRVPVEATSEDLQAYFSQFGWVLDVYLPKDAKKTSHRGFGFVTFADEASAARVARRRHFIHGREIAVDSASPTDRAHGGGQIPRNALPSLGGQQNLLPSEVLIGATTENDRSIQPSTSSTAKWGKKLFIGRIPIEATAIDVRLHFSQFGHVLDVYLPKDDRKMSHRGFGFVTFADEISAEYASQKIHRILGQKIVLDRAAPIESEGLSIDPSSSIVRTLDGSILTQQSLSSQQTFGSELTQSHEATDLQLAQSRDATINRPIRTSLRYRPY* | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl13g01894 | 534 | Gene3D | - | 256 | 339 | IPR012677 | - | |
Eupl13g01894 | 534 | Gene3D | - | 385 | 468 | IPR012677 | - | |
Eupl13g01894 | 534 | SMART | rrm1_1 | 260 | 331 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | SMART | rrm1_1 | 95 | 166 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | SMART | rrm1_1 | 389 | 460 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Gene3D | - | 5 | 85 | IPR012677 | - | |
Eupl13g01894 | 534 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | SUPERFAMILY | RNA-binding domain, RBD | 91 | 179 | IPR035979 | GO:0003676 | |
Eupl13g01894 | 534 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 335 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 68 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 390 | 450 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 262 | 328 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 154 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | Gene3D | - | 86 | 177 | IPR012677 | - | |
Eupl13g01894 | 534 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 | 7 | 181 | - | - | |
Eupl13g01894 | 534 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 388 | 464 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | SUPERFAMILY | RNA-binding domain, RBD | 258 | 352 | IPR035979 | GO:0003676 | |
Eupl13g01894 | 534 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 5 | 85 | - | - | |
Eupl13g01894 | 534 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 170 | IPR000504 | GO:0003723 | |
Eupl13g01894 | 534 | MobiDBLite | consensus disorder prediction | 333 | 356 | - | - | |
Eupl13g01894 | 534 | SUPERFAMILY | RNA-binding domain, RBD | 385 | 465 | IPR035979 | GO:0003676 | |
Eupl13g01894 | 534 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 86 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl13g01894 | Eupl-Chr13 | 39375165 | 39407767 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl13g01894 | 4 | 202 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.316 | 1.36e-13 | 71.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl13g01894 | K14411 | - | nnu:104610178 | 747.658 |