Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01894 ATGTGTCTTGGAGGCAAAAAGCTGGTGATATTGGGTATTCCCTGGGATGTCGATAGCGAAGGGCTAAGGCTGTATATGAGCCAGTTTGGTGAATTGGTCGATGTTATGGTAATGAAGGATCGTGTGTCAGGACGCTCTCGTGGTTTTGGCTATGTCACGTTTTCCTCTTCAGAAGATGCAAAGAAAGCACTTGCAGCTCAACATATTATGAATGGAAGGACGCTTGAGGTTAAAGTGGCAACTCCAAAGGAGGAAATGGTGTCATCTTCCAAGAAAAGTACTCGCATATTTGTTGCTAGAATACCGCCAAGTGTGACAGATGAAGATTTTCACAGCTATTTCATGAAGTATGGTCCAGTAATAGATGCTTACATGCCAAAGGATCCAGTAAAAAAGCAACATCGAGGGATTGGATTTGTGACTTATGAAGATGCAGACTCAGTAGACCAGCTTATGTCAGAGACTCATGAACTCGGAGGTTCTACAATTGCTGTGGATCGAGCAACTCCAAAGGATTCCAGAGGATATAGGGTTTCAAGCCACAGTCTCAGGACACCACATACTTTCAGAATGTCTAATGTGGTTGGCCATGACAGCACTGAGAGCTATTCGAGAATAGGAACAAGTGAATCTCAAGCCAACGAATTGTTGTCGTCCGTTGTCCATTTGGGCCAAGAGGGTTCTTGTGCAGGACATGTATTGACTGCAGGGGATGCTGGTTCAATTGGGGCTATTAAAGGACAGACTGCTGCAGGTGCTCCTGCAAGAATAGAAAGAAAGATGTTTATTGGCCGTGTTCCTGTGGAAGCTACGTCTGAAGATCTGCAAGCATATTTTAGTCAGTTTGGATGGGTTCTTGATGTTTACCTCCCAAAGGATGCAAAGAAAACATCTCACAGAGGCTTTGGCTTTGTAACATTTGCAGATGAAGCTTCGGCTGCACGTGTTGCTCGCCGTAGACATTTTATTCATGGGCGAGAGATTGCCGTTGACTCTGCGTCTCCAACAGATCGTGCACATGGAGGTGGGCAGATCCCTAGGAATGCATTGCCATCTTTGGGAGGTCAACAGAACCTGCTTCCTTCTGAAGTGTTGATCGGGGCCACAACTGAAAATGACCGTTCCATACAACCATCTACCAGTTCAACTGCTAAGTGGGGAAAGAAACTTTTCATTGGACGCATTCCAATTGAGGCTACTGCTATTGATGTGCGGTTGCACTTCAGTCAGTTTGGCCATGTTTTGGATGTGTATCTACCCAAGGATGACAGGAAGATGTCTCATAGAGGGTTTGGCTTTGTCACATTCGCTGATGAAATTTCAGCTGAATATGCTTCTCAGAAAATACATCGGATTCTAGGACAGAAGATTGTGTTGGATCGTGCAGCTCCCATAGAAAGTGAAGGATTGAGTATAGATCCCTCTTCTTCTATTGTCAGAACCTTAGATGGGTCTATTCTGACACAACAAAGTTTATCCAGTCAGCAAACTTTTGGTTCCGAGTTGACACAGTCTCACGAGGCCACCGATTTGCAGTTGGCACAGTCTCGTGATGCCACCATAAATCGACCCATTAGAACTTCATTGCGGTATAGACCATATTGA 1605 0.4486 MCLGGKKLVILGIPWDVDSEGLRLYMSQFGELVDVMVMKDRVSGRSRGFGYVTFSSSEDAKKALAAQHIMNGRTLEVKVATPKEEMVSSSKKSTRIFVARIPPSVTDEDFHSYFMKYGPVIDAYMPKDPVKKQHRGIGFVTYEDADSVDQLMSETHELGGSTIAVDRATPKDSRGYRVSSHSLRTPHTFRMSNVVGHDSTESYSRIGTSESQANELLSSVVHLGQEGSCAGHVLTAGDAGSIGAIKGQTAAGAPARIERKMFIGRVPVEATSEDLQAYFSQFGWVLDVYLPKDAKKTSHRGFGFVTFADEASAARVARRRHFIHGREIAVDSASPTDRAHGGGQIPRNALPSLGGQQNLLPSEVLIGATTENDRSIQPSTSSTAKWGKKLFIGRIPIEATAIDVRLHFSQFGHVLDVYLPKDDRKMSHRGFGFVTFADEISAEYASQKIHRILGQKIVLDRAAPIESEGLSIDPSSSIVRTLDGSILTQQSLSSQQTFGSELTQSHEATDLQLAQSRDATINRPIRTSLRYRPY* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01894 534 Gene3D - 256 339 IPR012677 -
Eupl13g01894 534 Gene3D - 385 468 IPR012677 -
Eupl13g01894 534 SMART rrm1_1 260 331 IPR000504 GO:0003723
Eupl13g01894 534 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl13g01894 534 SMART rrm1_1 95 166 IPR000504 GO:0003723
Eupl13g01894 534 SMART rrm1_1 389 460 IPR000504 GO:0003723
Eupl13g01894 534 Gene3D - 5 85 IPR012677 -
Eupl13g01894 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl13g01894 534 SUPERFAMILY RNA-binding domain, RBD 91 179 IPR035979 GO:0003676
Eupl13g01894 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 259 335 IPR000504 GO:0003723
Eupl13g01894 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 68 IPR000504 GO:0003723
Eupl13g01894 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 390 450 IPR000504 GO:0003723
Eupl13g01894 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 328 IPR000504 GO:0003723
Eupl13g01894 534 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 154 IPR000504 GO:0003723
Eupl13g01894 534 Gene3D - 86 177 IPR012677 -
Eupl13g01894 534 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 7 181 - -
Eupl13g01894 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 388 464 IPR000504 GO:0003723
Eupl13g01894 534 SUPERFAMILY RNA-binding domain, RBD 258 352 IPR035979 GO:0003676
Eupl13g01894 534 FunFam heterogeneous nuclear ribonucleoprotein 1 5 85 - -
Eupl13g01894 534 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Eupl13g01894 534 MobiDBLite consensus disorder prediction 333 356 - -
Eupl13g01894 534 SUPERFAMILY RNA-binding domain, RBD 385 465 IPR035979 GO:0003676
Eupl13g01894 534 SUPERFAMILY RNA-binding domain, RBD 5 86 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01894 Eupl-Chr13 39375165 39407767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01894 4 202 Eukaryotic Initiation Factors Gene Family AT3G16380 26.316 1.36e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01894 K14411 - nnu:104610178 747.658