Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01875 ATGGTGAGGAAGCCAAGCATGGGTCGCCAAAAGATTGAAATCAAGAGAATAGACCGGGAAGACGCCCGACAAGTTACGTTCTCGAAGCGTCGAGCCGGGCTTTTCAAGAAGGCTAGTGAGCTTTGCATTTTATGTGGTGCGGAGACAGCCATTATTGTTTTCTCTCCGGCTGGCAAGCCCTTCTCCTTCGGCCACCCATGTGTTGAATCCGTTGTTAATCGGATACTCAGTTCAAACTCTCCTATCGACGTCGGTTCACTCCCCATTGTCGACGGGCACCAAGGGGCGTCTGTTCGTGAGCTCAACCGACAATATACCGAGGTCCTTAACCAATTAGAAGCCGAGAAGAAGCGAGGAGTGATGCTCGATCAGTTGACGAAAGCGAGTCAAGGCCAAGCCCAAGGCCAACTCTTGTGGGAAGCACCAATCCATGATCTTGGCTTACATGAGCTTGAACAATTAAGGCTCTCCATGGAAGAGCTTAAGCATAATGTAGCTAAACGAGTCGATGTGCTATTGATCGACACTTCTCCGTTGTCGTTCATGGGGGTGAATTCGATCAGTGTCGTTGATCAATTTGTCAATACTAAACCAATTATGCCTCATGGTTTTGGTTTTGGTTTTGAACGTGGGCTTTTTTGA 642 0.4813 MVRKPSMGRQKIEIKRIDREDARQVTFSKRRAGLFKKASELCILCGAETAIIVFSPAGKPFSFGHPCVESVVNRILSSNSPIDVGSLPIVDGHQGASVRELNRQYTEVLNQLEAEKKRGVMLDQLTKASQGQAQGQLLWEAPIHDLGLHELEQLRLSMEELKHNVAKRVDVLLIDTSPLSFMGVNSISVVDQFVNTKPIMPHGFGFGFERGLF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01875 213 Gene3D - 20 84 IPR036879 GO:0003677|GO:0046983
Eupl13g01875 213 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 FunFam Agamous-like MADS-box protein AGL62 19 84 - -
Eupl13g01875 213 Gene3D - 87 172 - -
Eupl13g01875 213 PANTHER MADS BOX PROTEIN 9 167 - -
Eupl13g01875 213 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 Coils Coil 98 118 - -
Eupl13g01875 213 CDD MADS_MEF2_like 8 80 IPR033896 GO:0000977|GO:0045944
Eupl13g01875 213 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Eupl13g01875 213 SUPERFAMILY SRF-like 7 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01875 Eupl-Chr13 39096159 39096800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01875 6 165 Type I MADS-box Gene Family AT2G24840 49.375 2.44e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl13g01875 SRF-TF 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01875 - - nnu:104611768 236.498