Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01841 ATGGGTACGGGTTGGCGGAGAGCCTTCTGCACATCCATCCCTCGAGACCCGGAAATCACAGTAGCAGAGAAGCAACAACACCGCAGTCCTAGCCCAACTTCCAGAAGCTGTACCAAAATCGGGTTTCTCTCCGGTAGTAGCAACCCATCAACGCCGCGCTTACAATCTCAACCCGTTTCCAGTCCGAGCTTACGGTGTCGAACAACAGCTACTGCTCCAGCACCACCCTCGGCGCATGATAGCCCCAGTCTTTTACAATGCAAGACCACCAAGAACCCGAAAGTGTTGCAGAGTTCGAACCCATCTTCGCCTACCTCCAGATTTTCCCTCTTCAAAACCGGTTTACGCTTATCCAAGAATAGCTGTGGAATCTGTTTACAGAGCGTGAAGACTGGCCAGGGGACCGCCATCTACACGGCTGAGTGTTCTCACGCTTTTCACTTCCCGTGCATAGCTGCGCACGTTAGAAAGCACGGCAGTCTCGTGTGCCCCGTCTGCAGTGCCAGCTGGAGAGATGTACCCTTGCTTGCCATCCACAAGAACCAGCCACCACCACCGCTAAAACCAGAATCCGAAGAACGAGATGTTAAAACAAAGGAGGAGAAGCAATCCAAGCCGTCTGATCCAAGGGTTTATGATGATGATGAGCCGTTGTTGTCTCTGACGGCTGGGGCTCGGTTTATTCCCATACCGGAAGCTGATGAGAACGGAGGGGAAGAAGAGATCGAAGAATTTCAAGGTTTTTTCGTAAATCCTAATCCATCTTCTTCGATCAAATCTGGTGAATCAGTGGCAATCAACGGTGGAGATTTGAGAAATGTTGAAGTGAGATTACTACCAGAAGCAGCTGTAGTCTCAGTCGGGAGAAACCATGAGAACTACGCAGTGGTAATGAAGGTTAAGGCTCCTCCACCCCCGGCGCGTAATAGCACAACGGCGCCGCTTCTCGATCCGGCGCGTCGTGCGCCAATCGATCTTGTTACGGTGCTCGATGTTAGCGGGAGCATGACCGGCGCGAAGCTACAGATGCTAAAACGAGCCATGCGCCTTGTAATCTCTTCGCTCGGCTCAGCCGATCGGCTTGCCATTGTTGCCTTCTCTGCAACTCCTAAGAGGCTGTTGCCGTTGAGAAGAATGTCGGCTCAAGGTCAGCGATCGGCGCGGCTTATCATCGATCGGCTCGTCTGTGGTCAAGGCACCAGCGTCGGCGATGCCTTGAGAAAAGCTACGAAAGTTCTTGAAGATCGACGGGAGAGAAACCCCGTTGCTAGCATCATGCTTCTGTCAGACGGCCAGAACGAGCGGGTCTCCACCAACTCCATCAATCGACGACGTCCGTCCTCCCACGTGTCGTCCACTCGTTTCGCACACCTTGAGATTCCCGTACATGCATTTGGCTTCGGTGAGAACGGCGGTCACAGCCACGAACCGGCCGAGGACGCATTCGCCAAATGCGTCGGCGGGTTATTGAGCGTGGTCGTGCAAGATATACGGCTACAGATTGGTTTTTCCTCCGGTTCTTCTCCCGCTGAAATCTCTGCCGTTTATTCCTGCAGCGGAAGGCCTACAATACTGGGGTCTAGTTCAGTTCGACTCGGCGATCTTTACGCCGAGGAGGAGAGGGAACTACTCGTCGAGTTGAGAGTTCCTACGGCCGCCATTGGAGCCCACCATGTGATGTCCGTCCGATGCTCCTACAAAGACCCGGCGACTCAAGAACTCATTAACGGAAAGGAGCAAGCTCTCCTCGTACCTCGTCCTCATGCCGTACGATCATCAGCTCCAAAGATCGAACGACTGAGGAATCTCTTCATTACAACTCGCGCCGTAGCTGAGGCTCGACGATTAATGGATCACAACGACGTATCCAGCGCACTCAATTTGCTCTCTTCGGCTCGCGCCTTGTTGTTGCAATCGAGCTCGATCTCAGCTGATGACTATCTCCGCGGCTTAGAAGCCGAGTTAGTAGAGCTACATTGGCGCCGACAGCATCATCATCATCAACTGCAGCAGCAGATCCAACGGCGGAGAATAACCGAACGAGAACTAACTTACTTAGACGAAAATGGCGAGCCACTTACGCCAACATCAGCTTGGCGAGCAGCTGAGCGTCTCGCGAAAGTAGCCATTATGAGAAAGTCGTTGAATAGAGTCAGCGATTTACACGGCTTCGAGAACGCCAGATTCTAA 2190 0.5292 MGTGWRRAFCTSIPRDPEITVAEKQQHRSPSPTSRSCTKIGFLSGSSNPSTPRLQSQPVSSPSLRCRTTATAPAPPSAHDSPSLLQCKTTKNPKVLQSSNPSSPTSRFSLFKTGLRLSKNSCGICLQSVKTGQGTAIYTAECSHAFHFPCIAAHVRKHGSLVCPVCSASWRDVPLLAIHKNQPPPPLKPESEERDVKTKEEKQSKPSDPRVYDDDEPLLSLTAGARFIPIPEADENGGEEEIEEFQGFFVNPNPSSSIKSGESVAINGGDLRNVEVRLLPEAAVVSVGRNHENYAVVMKVKAPPPPARNSTTAPLLDPARRAPIDLVTVLDVSGSMTGAKLQMLKRAMRLVISSLGSADRLAIVAFSATPKRLLPLRRMSAQGQRSARLIIDRLVCGQGTSVGDALRKATKVLEDRRERNPVASIMLLSDGQNERVSTNSINRRRPSSHVSSTRFAHLEIPVHAFGFGENGGHSHEPAEDAFAKCVGGLLSVVVQDIRLQIGFSSGSSPAEISAVYSCSGRPTILGSSSVRLGDLYAEEERELLVELRVPTAAIGAHHVMSVRCSYKDPATQELINGKEQALLVPRPHAVRSSAPKIERLRNLFITTRAVAEARRLMDHNDVSSALNLLSSARALLLQSSSISADDYLRGLEAELVELHWRRQHHHHQLQQQIQRRRITERELTYLDENGEPLTPTSAWRAAERLAKVAIMRKSLNRVSDLHGFENARF* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01841 729 Gene3D von Willebrand factor, type A domain 325 492 IPR036465 -
Eupl13g01841 729 Pfam RING-like zinc finger 122 151 IPR001841 -
Eupl13g01841 729 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 120 724 - -
Eupl13g01841 729 ProSiteProfiles VWFA domain profile. 325 470 IPR002035 -
Eupl13g01841 729 ProSiteProfiles Zinc finger RING-type profile. 122 167 IPR001841 -
Eupl13g01841 729 MobiDBLite consensus disorder prediction 179 216 - -
Eupl13g01841 729 MobiDBLite consensus disorder prediction 186 215 - -
Eupl13g01841 729 MobiDBLite consensus disorder prediction 24 86 - -
Eupl13g01841 729 FunFam Probable E3 ubiquitin-protein ligase EDA40 325 489 - -
Eupl13g01841 729 SMART VWA_4 323 505 IPR002035 -
Eupl13g01841 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 175 IPR013083 -
Eupl13g01841 729 SUPERFAMILY RING/U-box 117 172 - -
Eupl13g01841 729 SUPERFAMILY vWA-like 323 497 IPR036465 -
Eupl13g01841 729 MobiDBLite consensus disorder prediction 20 86 - -
Eupl13g01841 729 CDD RING-H2_WAVH2 116 172 - -
Eupl13g01841 729 SMART ring_2 122 166 IPR001841 -
Eupl13g01841 729 CDD vWA_C3HC4_type 324 494 - -
Eupl13g01841 729 Pfam von Willebrand factor type A domain 325 470 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01841 Eupl-Chr13 38203069 38206852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01841 122 172 C3H Transcription Factor Family AT1G74410 41.176 5.55e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01841 - - nnu:104595574 994.571