Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01838 ATGTCTCCACCACTGCTTGGTGTTGCGGAGGAGGGGCTGAGCGATGCATCTTTGTTGACTTCTTCAGCCTCTGTGGATAGCATCAGCCAGAATAGCTCAGGATTGAAAGAGCGCAACTACATGGGATTGTCCGACTGTTCTTCAGTGGACAGCTCTGCAATCTCAAGTTTGTCTGAAGAAAATAAGAGCAGTCTGAATCTCAAAGCGACAGAGCTGAGGCTTGGGCTTCCTGGATCCCAATCTCCTGAAAGGGATCCAGAGCTTTCCCTGTTGAATTCAGGGAAACTTGACGAGAAGCCCCTGTTTCCTTTGCTTCCTTCAAAGGATGGTATCTTTACGTCGCCGCAGAAGACCATTGCATCAGGCAACAAAAGAGGGTTTTCCGATGCCATGGATGGGTCGGAGGTGAAAAGCACTGTGTTTACTGAAGGAAGTTGGATATTTCCTGCAGTTGGGTCTGAGCCTGAAGCTGCCCAATCCATGCCACAAGGGAAATTTCCTGTTAACTCAGGCATAAATGCAATGTTGTCAGTTAGGCCTTCTCCAAACTCAGGAGTGAAATCTGTTTCCCTGAAGGAGCACTCTGGGGCTCAGCCAGCCATGCTGAAAGAGATTGTGCCCCCAAAAGGATTACAGGACAGGCCTCGTGGTCCCAGCGACAGCAGCCATAACCAGATGAGTTCTGTTAATAACACTAGCAATCCACCTGCTGCCAAGGCACAGGTCGTGGGATGGCCACCGATAAGATCGTACAGGAAAAACACGTTGGCAACCTCTTCGAAGAACAATGATGAAGTGGATGGGAAACCGGGGCCTGGTGCTCTGTTTGTCAAGGTTAGCATGGATGGTGCTCCTTATTTGAGGAAGGTGGATCTGAGAACTTACTCTGCCTATCAAGAGCTGTCTTCTGCTCTTGAGAAGATGTTCAGCTGTTTTACTATTGGTCAGTGTGGATCCCATGGAGGTCCAGGGAAGGATATGCTGAGTGAGAGCAAACTGAGGGATCTTCTACATGGATCAGAATATGTCCTTACCTATGAGGACAAGGATGGTGACTGGATGCTTGTGGGAGATGTCCCCTGGGAGATGTTTATTGATTCATGTAAAAGGTTGAGGATCATGAAAAGCGCTGATGCCATTGGCCTAGCTCCAAGGGCCATGGAAAAATGCAGGAACAGGAACTAA 1185 0.4869 MSPPLLGVAEEGLSDASLLTSSASVDSISQNSSGLKERNYMGLSDCSSVDSSAISSLSEENKSSLNLKATELRLGLPGSQSPERDPELSLLNSGKLDEKPLFPLLPSKDGIFTSPQKTIASGNKRGFSDAMDGSEVKSTVFTEGSWIFPAVGSEPEAAQSMPQGKFPVNSGINAMLSVRPSPNSGVKSVSLKEHSGAQPAMLKEIVPPKGLQDRPRGPSDSSHNQMSSVNNTSNPPAAKAQVVGWPPIRSYRKNTLATSSKNNDEVDGKPGPGALFVKVSMDGAPYLRKVDLRTYSAYQELSSALEKMFSCFTIGQCGSHGGPGKDMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSADAIGLAPRAMEKCRNRN* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01838 394 MobiDBLite consensus disorder prediction 179 244 - -
Eupl13g01838 394 FunFam Auxin-responsive protein 269 386 - -
Eupl13g01838 394 Gene3D - 271 387 - -
Eupl13g01838 394 SUPERFAMILY CAD & PB1 domains 272 375 - -
Eupl13g01838 394 ProSiteProfiles PB1 domain profile. 274 376 IPR000270 GO:0005515
Eupl13g01838 394 MobiDBLite consensus disorder prediction 217 238 - -
Eupl13g01838 394 Pfam AUX/IAA family 70 385 IPR033389 -
Eupl13g01838 394 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 380 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01838 Eupl-Chr13 38163089 38169113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01838 288 379 B3 DNA Binding Superfamily AT1G19220 31.522 1.67e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Eupl13g01838 AUX_IAA 7.1e-91 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01838 K14484 - nnu:104610541 605.52