Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01837 ATGGAGCTTAACGAGCATGGTTTCCTAGAGGAATTACTAGCTCTAAGAAGAGAAACTTGGGAAACTTTCCCTACTGGAATGAGTGAGTTCTTCACTAATGGGTGGAGTTTTGATTGTTTTAATGAAAACCCAGGTTTAGTTTTACCAAATTCTTCATTTGAAGGATTCAACATGTCGACTGAACCTGGTTTTGATTGTTCCTTGAATGAAGTTTACTGCCCTTTTGGTGATGGATTATCTGTTCCAGAGATTGATTACAAAAAACATGATATGCTGCCATTTCCTACTCAAGAAGATTACCCATTAATGATGGAGGATGAAGAACCAAGTCTACTTGGTGATGATCATCACAATTTGGAGGAAAGACAGACTAGTTGTAAAGTGGAGCAGATCCAAGCTACTGAAATTCCAGTGTTTGACATGGGTTTGTGTTTAGAGAGAAAGAATCGGGTAAAGAAGGTAGATGGGCAGCCATCGAAAAATCTAATGGCTGAGAGACGAAGAAGAAAGCGATTGAATGACCGCCTTTCGATGCTTCGATCCGTTGTTCCTAAGATAAGCAAGATGGATAGAACATCTATACTTGGAGATACAATAGATTATATGAAAGAGCTTCTTGAGAGAATCAAGAATTTGCAAGAAGAAATTGAAGTGGGTTCAAATCAGTTAGACTTAATGGGCATCTTCAAGGAGCTAAAATCAAATGAAATCCTGGTGAGAAATACACCCAAGTTTGATGTGGAAAGGAGGAACATGGATACCCGGATCGAGATTTGCTGCGCAGGGAAGCCGGGGTTGTTGCTATCGACTGTAAACACTCTTGAAGCACTAGGCCTTGAGATTCAACAGTGTGTTATAAGTTGTTTCAATGATTTTGCAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAGAGAAGTATACCCTCTGAAGAGATAAAGCAAGCTTTATTTAGAAATGCAGGTTATGGAGGGAGGTGTCTGTAG 984 0.3994 MELNEHGFLEELLALRRETWETFPTGMSEFFTNGWSFDCFNENPGLVLPNSSFEGFNMSTEPGFDCSLNEVYCPFGDGLSVPEIDYKKHDMLPFPTQEDYPLMMEDEEPSLLGDDHHNLEERQTSCKVEQIQATEIPVFDMGLCLERKNRVKKVDGQPSKNLMAERRRRKRLNDRLSMLRSVVPKISKMDRTSILGDTIDYMKELLERIKNLQEEIEVGSNQLDLMGIFKELKSNEILVRNTPKFDVERRNMDTRIEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFAMQASCSEELEQRSIPSEEIKQALFRNAGYGGRCL* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01837 327 Coils Coil 195 222 - -
Eupl13g01837 327 CDD ACT_UUR-ACR-like 254 316 - -
Eupl13g01837 327 SMART finulus 162 211 IPR011598 GO:0046983
Eupl13g01837 327 Gene3D - 147 222 IPR036638 GO:0046983
Eupl13g01837 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Eupl13g01837 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 123 321 - -
Eupl13g01837 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 224 IPR036638 GO:0046983
Eupl13g01837 327 Pfam Helix-loop-helix DNA-binding domain 162 205 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01837 Eupl-Chr13 38127806 38129790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01837 147 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.667 8.60e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g01837 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01837 - - nnu:104595568 525.783