Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01819 ATGGGGAGAGGTAAGATCGTGATCCGTAGGATCGATAATTCGACGAGCAGGCAAGTGACTTTCTCGAAGCGAAGGAACGGATTGCTGAAGAAGGCGAAGGAGTTGGCGATCTTGTGTGATGCGGAAGTAGGTTTGATGATCTTCTCCAGCACTGGGAAGCTCTATGATTTCTCCAGTACCAGGTCGGATAGAATTTCATGA 201 0.4826 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLMIFSSTGKLYDFSSTRSDRIS* 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01819 66 CDD MADS_MEF2_like 2 65 IPR033896 GO:0000977|GO:0045944
Eupl13g01819 66 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Eupl13g01819 66 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl13g01819 66 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Eupl13g01819 66 Gene3D - 13 66 IPR036879 GO:0003677|GO:0046983
Eupl13g01819 66 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01819 Eupl-Chr13 37852911 37853500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01819 1 62 MADS-box Gene Family AT2G14210 87.097 4.66e-34 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl13g01819 SRF-TF 1.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01819 K09264 - psom:113330621 121.324