Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01815 ATGTCATCTCTCAACGTGCAACTGCATACACGTGATGATCATGTGGTGATGGATAACGGCATCCTCCAAGTCACCTTGTCAAATCCGGGGGGAATTGTTACCGGAGTACAGTACAATGGTATCGACAATTTACTTGAAATAAATAATGATGAAGATAATAGAGGGTATTGGGATGGTGTTTGGAGCAAACCGAACGCATCGAAATTCTCCGGAATTTACGATAGGATACTGGGGACAAATTTGACGGTGATAAAGGAAGATGATGACCAGGTGGAGCTTTCATTCACAAGAACATGGGACCCCTCTTTAGAAGGCGACCACATTCCCTTGAATATAGATAAAAGGTTTATAATGCTGAGTGGTTGCTCCGGTTTCTACTCCTACGCCATTTACGAGCACTTGGAAGGATGGCCTGATTTCAACATCGCAGAAACCAGGATTGCTTTCAAGCTTAGCAAAGACAAGTTTCACTATATGGCCATATCAGACGACAGGCAAAGGATCATGCCCATGCCAGAAGACCGCGCTACGGGTCAACCCCTGGCCTACCCAGAAGCAGTTCTTTTGACAAATCCAATCAATCCAGACCTTAAAGGCGAGGTGGATGACAAGTACCAGTATTCATGCGAGGACAAAGACAACAGGGTCCACGGATGGATTTGCGACGATCCTCCTGTTGGATTCTGGATGATCACACCAAGCAATGAGTTCCGTACAGGTGGGCCTCTCAAGCAGGACCTCACCTCTCACGTGGGTCCCACCAACCTCGCAATGTTTGTTAGTCTTCACTATGCCGGAGACGATCTGGGGCTGAAATTCCGAGACGGAGAACCATGGAAAAAAGTTTTCGGCCCGGTTTTTATCTATCTCAACTCAGTCTCAGAGGAAGATGATCCACATACAACACTCTGGGAGGACGCAAAAGCTCAGATGCTGTTCGAAGTCCAAAGCTGGCCATACAGTTTCCCGGTTTCAGAAGACTTCCCTTATTCCGATCAACGTGGTACCGTTAGCGGCAGATTACTAGTCCAGGACCGGTACATCGATGAAGAAAACATACCGGCGGACTCTGCCTATGTCGGGTTAGCTCCGCTGGGAGAAGTCGGATCATGGCAAAGGGAATGCAAGGGTTACCAGTTTTGGACTCAAGCTGATCCTGATGGGTCTTTCTCCATTAGTAATATTCGGGCCGGAGATTATAATCTTTTCGCATCGGTCCCTGGTTTTATTGGAGATTACAAACTTGATGTTAATCTTACCATCGATCCAGGATATGATATCGATCTTGGCGATCTTATATACGAACCTCCAAGAGATGACCCCACCTTGTGGGAGATAGGTGTCCCGGATCGTTCTGCTGCAGAATTCTACGTTCCCGACCCTAATCCGAATTATACCAACAAACTTTATGCCAATCATCCCGATCGGTTTAGGCAATATGGATTGTGGGAGAGGTATGCGGATTTATATCCAGATGGAGATCTTGTCTACACAGTCGGCGTTAGTGACTACCAGAAAGATTGGTTTTTCGCACAAGTTACCAGGAAGAAAGAAGATAACACATTCCAAGCAACCACATGGCAGATTATATTCGAACTCGACAATGTGGACCAAACCAGAACTTATAAATTACGATTGGCGCTTGCATCCGCCGCGAATGCTGAATTGCAAGTTCGCTTCAACGACGGGGAAGTGTCTCCGCCACACTTCACAACAGGACTAATAGGCAAGGATAATGCGATCGCGAGGCACGGGATTCATGGGCTGTACCACTTTTATAACGTCGACGTACCGGGTGATCTTCTGGTGGAAGGATACAATACAATATTTCTGACTCAAACAAGAAGCACTGGCCCCTTTGAAGGGATCATGTATGACTATATTCGTTTAGAAGGCCCCTCAACTTCCGATTCCAACAAGAAGGATTGA 1929 0.465 MSSLNVQLHTRDDHVVMDNGILQVTLSNPGGIVTGVQYNGIDNLLEINNDEDNRGYWDGVWSKPNASKFSGIYDRILGTNLTVIKEDDDQVELSFTRTWDPSLEGDHIPLNIDKRFIMLSGCSGFYSYAIYEHLEGWPDFNIAETRIAFKLSKDKFHYMAISDDRQRIMPMPEDRATGQPLAYPEAVLLTNPINPDLKGEVDDKYQYSCEDKDNRVHGWICDDPPVGFWMITPSNEFRTGGPLKQDLTSHVGPTNLAMFVSLHYAGDDLGLKFRDGEPWKKVFGPVFIYLNSVSEEDDPHTTLWEDAKAQMLFEVQSWPYSFPVSEDFPYSDQRGTVSGRLLVQDRYIDEENIPADSAYVGLAPLGEVGSWQRECKGYQFWTQADPDGSFSISNIRAGDYNLFASVPGFIGDYKLDVNLTIDPGYDIDLGDLIYEPPRDDPTLWEIGVPDRSAAEFYVPDPNPNYTNKLYANHPDRFRQYGLWERYADLYPDGDLVYTVGVSDYQKDWFFAQVTRKKEDNTFQATTWQIIFELDNVDQTRTYKLRLALASAANAELQVRFNDGEVSPPHFTTGLIGKDNAIARHGIHGLYHFYNVDVPGDLLVEGYNTIFLTQTRSTGPFEGIMYDYIRLEGPSTSDSNKKD* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01815 642 CDD RGL4_C 444 631 - -
Eupl13g01815 642 SUPERFAMILY Galactose mutarotase-like 10 303 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl13g01815 642 FunFam Rhamnogalacturonate lyase B 330 429 - -
Eupl13g01815 642 Gene3D - 6 308 IPR014718 GO:0030246
Eupl13g01815 642 CDD RGL4_M 333 432 IPR029413 -
Eupl13g01815 642 Gene3D - 330 425 - -
Eupl13g01815 642 CDD RGL4_N 8 298 - -
Eupl13g01815 642 Pfam Polysaccharide lyase family 4, domain II 356 427 IPR029413 -
Eupl13g01815 642 SUPERFAMILY Starch-binding domain-like 330 427 IPR013784 GO:0030246
Eupl13g01815 642 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 634 - -
Eupl13g01815 642 SUPERFAMILY Galactose-binding domain-like 439 631 IPR008979 -
Eupl13g01815 642 Gene3D - 440 631 - -
Eupl13g01815 642 Pfam Rhamnogalacturonate lyase family 3 201 IPR010325 -
Eupl13g01815 642 Pfam Polysaccharide lyase family 4, domain III 442 630 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01815 Eupl-Chr13 37761113 37769812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01815 1 634 Polysaccharide Lyase AT1G09890 65.620 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01815 K18195 - nnu:104588462 1010.75