Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01807 ATGACGAAGAAGAACAACAAGAATCACAGCCGTTCAATACTCCACCTCTTCGGCTACCGTGCACCGATAATCCATGGAATCACCTCCGTCTATCTGCTCCTGCTGTTGCCAGCGGTGCCATACGCCGCTGCACAATCGCCGCCGCTGTATTCGAGCGGATTCAACCCGAACGTCCGCCCTTCAATGGTGGTCATCATCATTGTTCTCGTAGCCGCTTTCTTCTTCGTGGGTTTGTTCTCGCTCTACATCCGTCAGTGCGTAGACGAAAGTCGCCATAGAGGAAGCCCCCGGTGGGCGAATGGTGTCGTACGTTCGCGACGGGGAGCTCGCGGCCTCGATCTGGCCGTTATCGAGACTTTTCCGACCTTCATTTACTCCGTTGTGAAAGGGCTCAAGATAGGGAAGGGAACGCTAGAATGTGCTGTGTGTTTAAACGAGTTCGAAGATGACGAGAAGCTTCGATTGCTCCCCAAATGTGATCACGTCTTCCACCCTGATTGTATCGACGCTTGGTTGACTTCTCATACCACCTGCCCGGTCTGCCGAGCTAACCTCGAGCCGGAATCCGGCGAAGCCACCGGTAGCACCGCTGCAGCACAAATGTCGGATTCCGACAGTGAATCGGATGATGTGAACCGCTCATCGGATACCAACGACGCGCAAAATCAAGTCTCGATCGGTGTGACCGACGATCAGAACAGAGATCCACAGCCCGAGGTCATAAATCCTGCTCAAATTTCAATCCAGAACCGTCCAGTGGGATCCAGATCAAGGAGACCGCGAATAGCAGGAAAATTCCCGCGATCGCACTCGACTGGCCACTCGCTCGTTCAACCGGGAGAAAACTGCGAGAGGTTTACTTTAAGGTTGCCGGAAGAGGTAAGGAAGCAGATCGTGAACGAGAAGCTGAACCGTACGACGAGTTGCATCTCTGTTCCGAACCTAGATGGGTCAGTTTCGGGCGGAAGTACTCGCCGGGGTAACCGGGGCGGTGGTGAAGGGAGCAGTCGAGGAAAGAACTATCAGTCCCGGCGGTTCGACCGGGCAGCGAAATCGGACCGCTGGATGTTCTCGATGGCACCTCCGTTTTTCTCTCGGACGTCTTCCATTGCTGACGGCGAGGCGTCAGCGAATCCCAAGGCTTCCCTAACGTCCGTCAAGGCGCCGTTTGAGTATCCTGACGCCAAAGCTGACGGCGCTGAGCAGTCATCGTCAGCTCGACCTCCGGTTTAA 1233 0.5507 MTKKNNKNHSRSILHLFGYRAPIIHGITSVYLLLLLPAVPYAAAQSPPLYSSGFNPNVRPSMVVIIIVLVAAFFFVGLFSLYIRQCVDESRHRGSPRWANGVVRSRRGARGLDLAVIETFPTFIYSVVKGLKIGKGTLECAVCLNEFEDDEKLRLLPKCDHVFHPDCIDAWLTSHTTCPVCRANLEPESGEATGSTAAAQMSDSDSESDDVNRSSDTNDAQNQVSIGVTDDQNRDPQPEVINPAQISIQNRPVGSRSRRPRIAGKFPRSHSTGHSLVQPGENCERFTLRLPEEVRKQIVNEKLNRTTSCISVPNLDGSVSGGSTRRGNRGGGEGSSRGKNYQSRRFDRAAKSDRWMFSMAPPFFSRTSSIADGEASANPKASLTSVKAPFEYPDAKADGAEQSSSARPPV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01807 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 188 IPR013083 -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 215 254 - -
Eupl13g01807 410 PANTHER RING FINGER DOMAIN-CONTAINING 45 186 - -
Eupl13g01807 410 SUPERFAMILY RING/U-box 134 187 - -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 189 205 - -
Eupl13g01807 410 SMART ring_2 140 181 IPR001841 -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 314 346 - -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 366 383 - -
Eupl13g01807 410 FunFam E3 ubiquitin-protein ligase ATL6 100 188 - -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 188 278 - -
Eupl13g01807 410 CDD RING-H2_EL5-like 139 182 - -
Eupl13g01807 410 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Eupl13g01807 410 MobiDBLite consensus disorder prediction 366 385 - -
Eupl13g01807 410 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01807 Eupl-Chr13 37673002 37674891 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01807 26 367 Rapid Response to Elicitors AT3G05200 44.134 6.76e-84 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01807 K10664 - nnu:104604112 425.631