Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01806 ATGGCATTAGAAGCTGTGGTGTTCCCACAAGAACACTTTAGTTATGTTTGCAAGGATTTGTTGTACTCCTTGGGAGGAGGTTGGATCTGTGACAGCTTTGGTGTAGAAGAGGAAGTTGAGTTTCTTGAGAACAATAATATAGCTGATCAGCAAGGTCTTCATGGAAGTTGGGATTCTTCTTCTTCTTCAATGGTGCAAAATGTTAAGGAACGGGATAACAATTCGTCTCCTGAGGCTTGCACTGGTGATGGGTTCTTTACTGGTGTGTTTCAACCTATGGAAGCTCCTGCGAATACGACTGGTCGCCGGAAGAGACGACGGACTAAAAGTTGCAAGAACAAAGAAGAAGTTGAGAATCAGAGGATGACCCACATTGCTGTCGAACGTAACCGACGGAAACAGATGAACGAGTACCTCTCTATGCTGAGATCTTTGATGCCGAATTCTTATGTTCAAAGGGGTGACCAAGCATCCATTATAGGGGGAGCCATTAATTTTGTGAAAGAGCTGGAACAACACCTTCAATCTCTCGAGGCCCAAAAGCGAATAACGCAAGAATCCGACCCCGGTTTCTCCTCCCCATTTGCTGATTTCTTCACCTTCCCTCAGTACTCCTCTTGCTCGACTCAAGCCAACAATTCAGGAACGGCGATGAACGAATCGGTCGCCGAGAATCGATCGGCAATTGCAGACATTGAAGTGACCATGGTTGAGAGCCATGCCAACCTGAAAGTACTCTCGAAAAGACGACCGAAACAGCTCTTGAAGATGGTAACTGGGTTTCAAAATCTCCGCCTTACAATCCTCCACCTCAATGTTACAACCGTTGATCAGATGGTCCTCTACTCTTTCAGTGTTAAGGTTGAGGATGATTGCCACCTTACATCAGTTGATGAAATTGCTACTGCTGTTTATCAGATGCTAGGTAGGATCCAAGAGGAGGCTGCTGCTACATTGAGTTGA 963 0.4559 MALEAVVFPQEHFSYVCKDLLYSLGGGWICDSFGVEEEVEFLENNNIADQQGLHGSWDSSSSSMVQNVKERDNNSSPEACTGDGFFTGVFQPMEAPANTTGRRKRRRTKSCKNKEEVENQRMTHIAVERNRRKQMNEYLSMLRSLMPNSYVQRGDQASIIGGAINFVKELEQHLQSLEAQKRITQESDPGFSSPFADFFTFPQYSSCSTQANNSGTAMNESVAENRSAIADIEVTMVESHANLKVLSKRRPKQLLKMVTGFQNLRLTILHLNVTTVDQMVLYSFSVKVEDDCHLTSVDEIATAVYQMLGRIQEEAAATLS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01806 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Eupl13g01806 320 FunFam Basic helix-loop-helix transcription factor 110 185 - -
Eupl13g01806 320 PANTHER MAX DIMERIZATION, MAD 79 316 - -
Eupl13g01806 320 SMART finulus 125 176 IPR011598 GO:0046983
Eupl13g01806 320 MobiDBLite consensus disorder prediction 91 116 - -
Eupl13g01806 320 CDD bHLH_AtFAMA_like 122 194 - -
Eupl13g01806 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 186 IPR036638 GO:0046983
Eupl13g01806 320 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Eupl13g01806 320 Coils Coil 167 187 - -
Eupl13g01806 320 Gene3D - 110 187 IPR036638 GO:0046983
Eupl13g01806 320 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01806 Eupl-Chr13 37649639 37651258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01806 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.780 8.43e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g01806 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01806 - - nnu:104608628 454.136