Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01805 ATGGCGTTTAATCATCGAAGTTCTCTCTTATCGAGAAGAATTGAAGAAGATACTACACCACCATCTTGTTATTTTTTTCCCTTTTCTCGCTGCGTTCCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCAAAACCAGCATATAGCACCTCTTGTGATCATCATAATCGCTGTACTTGGTAGTTGTTTTCTTCTCGTTACCTACTACGTTATTCTTGTGAAGTACTGTTCAAGTTGGACCCGTTCAAGGAGAACTCCACCCCAATCGGACGGACCCAATGAAGATTTTCTCGATGAGAATCATGGCCCGGTGGTAGACCACCCCATATGGTTCATCAACACCGTCGGTCTCGAACAATCAATCATCAACGCCATTACCGTCTGTAAGTACAAGAGAGGAGATGGTCTGGTTGAAGGGACAGAGTGTTCTGTTTGCCTCAACGAGTTCCAGGAGGACGAGACTCTTCGTCTTCTACCCAAGTGCAGCCACGCCTTTCACCTTCCTTGTATCGATGCTTGGTTGAGATCGCATACTAATTGCCCTATGTGTCGTGCTCATATTTTCGTCTCCAACCATGTTGGGTCTAGTTTGAGTGAAACAGGTCCAAATTTGAGTAATTCAGGTTTGGGGGATGAGATCAGGGTGGAGAATTCTGAGGGTGATGGTGGGTTGGGAGGCGATCGGAGCGGAGAAAGTGCGGTGAGACTTGACGACGAGAGGGAATTACAGGATGGAAGAAGGGATGTCGAGATTGCAAAGGAGGGTATACCTTCTCCTATTGAGAATCGGGTGCTCGATGATTTTGCTGACAATCAAGAGACCGTCGTCGAGGATGGGATACAGCCGATGAGAAGGTCTGTTTCGATGGATTCATCTTCGATGGCTTCGATGTTCTGTTTTTCTCTAGCTAATTTTCTCCCAGTAGAAGCAGAAGGAAGTTCAGCTGCCCATATAGTAAGAGGGAAGAAATCCAATTTGGGAATCATTGCTAAGCACTCAGGTGGAAGTCCAAGCATATTGAGACTGATGCGTAGTTGTAGTTCTTCGAAAGGGAAATCACTGCAGAAAGGGCCTGTTTCCATGAAGAGATCTTTCTCGAGTGGCGGCAAGTCCTTGTCATCCAGATACAGCGAAAACCGGAACTCAATTCTTCCCTTGTGA 1176 0.4694 MAFNHRSSLLSRRIEEDTTPPSCYFFPFSRCVPPLLPPPPPPPPPPPPQNQHIAPLVIIIIAVLGSCFLLVTYYVILVKYCSSWTRSRRTPPQSDGPNEDFLDENHGPVVDHPIWFINTVGLEQSIINAITVCKYKRGDGLVEGTECSVCLNEFQEDETLRLLPKCSHAFHLPCIDAWLRSHTNCPMCRAHIFVSNHVGSSLSETGPNLSNSGLGDEIRVENSEGDGGLGGDRSGESAVRLDDERELQDGRRDVEIAKEGIPSPIENRVLDDFADNQETVVEDGIQPMRRSVSMDSSSMASMFCFSLANFLPVEAEGSSAAHIVRGKKSNLGIIAKHSGGSPSILRLMRSCSSSKGKSLQKGPVSMKRSFSSGGKSLSSRYSENRNSILPL* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01805 391 SUPERFAMILY RING/U-box 141 195 - -
Eupl13g01805 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Eupl13g01805 391 MobiDBLite consensus disorder prediction 352 391 - -
Eupl13g01805 391 SUPERFAMILY Formin homology 2 domain (FH2 domain) 38 47 - -
Eupl13g01805 391 PANTHER RING-H2 FINGER PROTEIN ATL16 41 381 IPR044600 GO:0016567|GO:0016740
Eupl13g01805 391 MobiDBLite consensus disorder prediction 204 247 - -
Eupl13g01805 391 Pfam Ring finger domain 146 189 IPR001841 -
Eupl13g01805 391 SMART ring_2 147 188 IPR001841 -
Eupl13g01805 391 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Eupl13g01805 391 CDD RING-H2_EL5-like 146 189 - -
Eupl13g01805 391 FunFam RING-H2 finger protein ATL54 122 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01805 Eupl-Chr13 37640132 37642803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01805 47 391 C3H Transcription Factor Family AT1G72220 32.703 3.28e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01805 - - nnu:104608629 350.903