Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01799 ATGCAGAGAATCAGTGCTCCCGCGAATTTCCAGCAAACAGAACAATCGATAAGTTCCCGGAGAGTCGAAATTCCTGCCATGTCCCGGTTAGTAAGGCCAAAGCAACAAGAAAAGAGTGATTTTCCTGCACATTACTGGAAAAAGTCTTCAGTTTTCCAGCAACAGCAACATCAACAGCAACAGCCACAAGGGTCGGTTTTCATAATTGAGCTCCGGCCGGGCCGTCGGGGTTTCAATAGGGCAGACGTAGAGAGTTTAATTTCCGATTGTAGTTCTCGCCCCTCAAATTTCTTTATTTATCCGTCGGGTTCCATCGCCGCGAAGATATTTTTCCGGCAATGGAGGGAAGCGCTCGAAGCGGTTGTCTTCTTCTGGGAGCGGCGCCTCGACGGCGCTCACCTTCTAAAGCCTTACCTTGTTAACTTCTCCATCCATTCGGACAAGGAGAAGATGAGGGAACGGCTTAAAGCTCTCTTTGTTGCCCACGTAGGGAGCCTTCTGGAAGGCGAGGCAGTCCAGCGGTGGATGAAGAAGATGAACGCGGCATCGGATGAGATACAAAAAATTCAGCTTTTGGTTCATGGGCAGCATCGTGGGCGGCATCATCGGAGGTATCGTCGACTGGATGATTTTACTGAGCTTCAGCAAAAGAAAGAAGGGCTTGTCGCAGAACGGGAACTGATCACAAAGAGGGTGGGGGAATTTAGGTCTGCTATGCACTGTATTCTTGCTCATCTCCATGGTTTGCATCCAGAAGATTGCCTTGATGACGGTGTGGAGGTGGAGATCTTGAGGTTCCCTCGTGAGTTCCACTGGAGTCGGATTCATCACGTGATAATGCGGGAGTGCCGGCGGTTCGATCAGGGTTTACCAATTTATAACTTCCGTCGTGAGATTCTCCGGGATATACATTGCCAGAAGGCAATGGTCTTGATTGGAGAAACTGGTTCTGGAAAGAGTACGCAGTTGGTTCAGTTTCTTGCTGATTCAGGACTAGCCGCTGATGGGACCATTATATGCACTCAACCCCGCAAAATTGCTGCCATTTCTTTGGCTCAAAGGGTTGGGGAAGAAAGTAATGGGTGTTATGAAGAAAATACTGTCATCAGTTATCCATCATATTCATCTGATCAGCGTTTCAATTCGAAGGTAATATTTATGACGGACCACTGTCTACTGCAGCACTGCATGAATGATAAGAAATTGGCAAGGATTTCTTACATCATTGTAGATGAGGCTCATGAAAGAAGCTTGAACACTGATCTCCTATTGGCATTGATTAACAAATTACTGCTTCAGAGACATGACTTGAGGGTTATTATAATGTCTGCAACAGCTGATTCCAGCAAGCTTTCAGACTACTTTGGTTGCGGAACCTTTCATGTGGTTGGGAGAAACTTTCCTGTTGAAATCAAATATGTTCCTAGTGCATCTGGAGAGGCTTCCACCATGTTGAGAGCCAATTCTGGTAATTGTGCTTCGTATGTTTTAGACGTTGTTAAGATTGCAACTGAGATCCACAAAACAGAGGAAGAGGGTGCCATTCTTGCTTTTTTGACTTCTCAGATGGAAGTAGAATGGGCTTGTGATAATTTTAAAGATCTCTCTGCAGTTGCATTGGCTTTGCATGGAAAACTTTCTTGGGAAGAACAATGTCGTGTTTTCCAAAAATTCCCAGGAAAGAGAAAAATTATATTTGCCACGAATCTAGCTGAGACGTCCTTGACTATTCCTGGGGTTAAGTATGTGGTTGACTCTGGCATGGTTAAAGAGAGCAGGTTTGAACCTAGCACTGCTATGAATGTCCTTAGAGTTTGCAGGATCAGCCAGAGTTCTGCTAATCAACGAGCTGGTCGCGCTGGTCGAATAGAACCGGGCAAGTGTTACAGGCTCTACTCAGACTGTGATTTTCGGTCAATGTCTTCCCATCAAGAACCAGAGATTCGTAGAGTTCACCTTGGCGTTGCTGTTTTGAGGATTCTCGCCTTGGGCATTAAAAAAGTACAGGAGTTTGATTTTGTTGATGCACCTAGTCCCGACGCAATTGACAGAGCCATGAAGAATCTAATTCAGTTAGGTGCTGTTATGATGAAAAATGATGTTCTAGAATTGACTGAGAAAGGTTGGTCCTTGGTTAAATTGGGTATTGAGCCTCGGCTTGGAAAGCTTATTCTTGATAGCTGTGATTGTTGTTTGTGGAGAGAAGGTCTTGCTCTTGCTGCTGTTATGGCGAATGCCAGTAGCATATTTTGCAGAGTTGGCAATGAGGAAAAAAAATTAAAATCAGATTGCCTTAAGGTGCAATTCTGCCATCGTGATGGTGACCTCTTCACTCTGCTTTCTGTGTACAAGGAGTGGGAGGATGTGCCCCAAGAGAACAAAAATAAATGGTGTTGGAACAACAGCATCAATGCGAAATCTATGCGAAGATGTAAAGAGACAGTACTGGAGTTGGAACATTGCCTTACAAATGAACTAAAAATTTTTGTTCCAAGTTACTGGCAGTGGAAGCCGCATGTGCCCACCGAGCATGATAAAAATCTGAAGAAGGTTATACTTTCATCCCTTGCAGAAAATGTAGCCATGTATTCTGGGTATGATCGGCTTGGTTACCAAGTGGCTTTAACTGGGCAACATGTTCAACTTCATCCTTCGTGTTCATTGCTAATATATGGTCAGAAGCCGAGTTGGGTAGTTTTTGGTGAACTTCTATCAATTTCAAACCAATATTTGGTTTGTGTCACTGCTTTTGACTATGAATGCTTGTCTACCCTTTCTCCTCCTCCTCTATTTGATGTATCACAGATGGAGAGCCAGAAGCTGCAGGTGACTGTGATGACTGGGTTTAGCAGTAATTTCTTGAAAAGGTTCTGTGGGAAAGCAAACAGCAGTCTGCTTTGTTTTGTTTCTCGCATTCAAAAAGCTTGCATGGATCAACGAATTAGTATTGAAATTGATTTTGATAAAGGAGAGATTCAGTTATTTGCCTCTTCAGAAGACATGGAAAATATTTCTGCCTTTGTGATGGAAGCCCTGAATTCTGAAACAAAATGGTTCAGGGATGATTGCATTGAAAAGTGTTTGTATCGTGGAGGACCTGATGTTTCTCCTCCTCTGGCACTGTTTGGAGCTGGTGCTGAAATTAAGCATCTGGAACTGGGAAAGAGATACTTAACTGTGGAAGTATTCCACACAGACGCGCGTGCTTTCGATGATAAGGAACTTCTAATGTTGTTTGAGAAATGTGCCTCTGGTATTTGTAGTTTCCACAAGTATGCAGGCATTGGAAAAGAAGGCGAGGACTCGGAGAAGTGGGGCAGGATCACTTTTCTTACTCCAGAAGCTGCTGAAAAAGCTGTCACAGAACTGCACGAACTTGAATTCTGCGGCTCCTTGCTGAAGGTATCTCCTTCACGGCCAACCTTTGGAAGTGATCATAGAATGTGCTCATTTCCAGCTGTAAAAGCCAAGGTTTTTTGGCCACGTCGGTATAGCAAGGGTTTTGCCATTGTTAAATGTGCAAGGGAGGATGCTGATTTTATTGTTGATGATTGCTCTAACCTCCTGATTGGAGAAAAGATTATTAATTGTGAAATTGGCAGGAAATACATGGATGGTGTTGTCATATCTGGCCTTGATAAAGAAATTTCTGAACCAGAAATCTTAGATATTTTAAGAACTGCAACAAACAGGAGAATACTGGGTGTTTTCTTGGTGAGGGGAGAAGCTGTTACCAACCCCACAGATGCTGCTTGTGCAGAAGCACTTCTTAGAGAAATTGCTCCCTTCATGCCTAGCAAGAATTCCCTTAGCAATTCTTGCCATGTCAAGGTGTTCTGCCCTGAACCAAAAGATTATTTGATGAAAGCAATCATCACTTTCGACGGGAGATTACATTTGGAGGCAGCAAAGGCTTTGCATCACATCCAAGGGAAGGTACTCGCTGGTTGTCTTTCATGGCAGAAGATACAGTGCCAGCAGATGTTTCACAGCTCTGTGTCCTGTCCTGCTCCTGTCTATTTTGTTATCAAGAAACAACTAGACTCTTTATTCAAAAGCTTCAAGCATCGAAATGGTGTATCCTACAACCTGGTAAGAAATGAGAATGGATCCTATCGAGTACAGATATCTGCAAATGCTACAAAGATTGTAGTGGAGTTGAGAAAGCCGCTGGAACAGCTGATGAAAGGGAAGACCATAAATCATGCTAGCCTCACCCCAAACATACTGCAGCTTGTCTTCTCCCGAGAAGGCATCACACTCATGAAGTCACTGCAACAAAAAACAGGGACGTTCATTTTGTATGACAGGCAGAGCCGGAATATCAGGGTCTTTGGCCCTCAGGACAAGGTTGCTGTGGCTGAGCAACAATTGGTGCAATCCCTGTTGGCCCTCCACGAAAATAAGCAACTCGAAATCCGTCTCCGAGGCGGAGATCTGCCACAGGACCTCATGAGAGAGGTAGTTGAGAAGTTCGGGTCAGATCTACATGGGCTCAAGGAGAAGGTACCAGGGGCTGAATTCACAATTAACACGCGCCGCCATGTCCTCTTGGTCCGAGGGAATGAGGAGGAAAAGAAAAAAGTAGAAACTATAATATTCGACACTGCACGTTCTCTCAGTTGCAGTGGGCTTGCTGAGCGGCCTGAAGGTGAGGCCACCTGCCCCATTTGCTTGTGCGAGTTGGAGGACTGTTACCAGCTCGAAGCTTGTGCGCATGGGTTCTGTCGATTGTGTTTGGTGGAGCAGTGTGAGTCTGCAATCAAAAACCGTGATGTGTTCCCCATGTGCTGTGCTCACGAGGGGTGTGGGACCCCAATCTTGGTTACAGATTTGAGGAGACTGCTGCTGAGTGAGAAGTTGGATGAGCTCTTCAGGGCTTCTTTGGGAGCATTTGTCGCATCGAGTGGCGGCACTTACAGGTTTTGCCCGTCTCCTGACTGTCCTGCAGTTTATCAGGTATCAGATCCTGGGACAACAGCAGAGCCATTTTTCTGTGGGGCTTGCTACGTAGAAACTTGCACGATATGTCACTTGGAGTACCATCCCTCTGTGTCGTGCGAGAGGTACAGGGAGTTCAAGGAGGACCCGGACTTATCACTGAAGGAGTGGTGCAAGGGCAAGGAACATGTGAAGAACTGCCCTGCCTGTGGTTACACAATAGAGAAGGGGGAGGGTTGCAACCATGTCGAGTGCAGGTGTGGGAGGCACATTTGCTGGGTCTGTTTGGCGTGCTTTAACTTCAGTGACGACTGCTATGGACACATGAGATCTGTACATCAGGCATTTGTATGA 5295 0.4529 MQRISAPANFQQTEQSISSRRVEIPAMSRLVRPKQQEKSDFPAHYWKKSSVFQQQQHQQQQPQGSVFIIELRPGRRGFNRADVESLISDCSSRPSNFFIYPSGSIAAKIFFRQWREALEAVVFFWERRLDGAHLLKPYLVNFSIHSDKEKMRERLKALFVAHVGSLLEGEAVQRWMKKMNAASDEIQKIQLLVHGQHRGRHHRRYRRLDDFTELQQKKEGLVAERELITKRVGEFRSAMHCILAHLHGLHPEDCLDDGVEVEILRFPREFHWSRIHHVIMRECRRFDQGLPIYNFRREILRDIHCQKAMVLIGETGSGKSTQLVQFLADSGLAADGTIICTQPRKIAAISLAQRVGEESNGCYEENTVISYPSYSSDQRFNSKVIFMTDHCLLQHCMNDKKLARISYIIVDEAHERSLNTDLLLALINKLLLQRHDLRVIIMSATADSSKLSDYFGCGTFHVVGRNFPVEIKYVPSASGEASTMLRANSGNCASYVLDVVKIATEIHKTEEEGAILAFLTSQMEVEWACDNFKDLSAVALALHGKLSWEEQCRVFQKFPGKRKIIFATNLAETSLTIPGVKYVVDSGMVKESRFEPSTAMNVLRVCRISQSSANQRAGRAGRIEPGKCYRLYSDCDFRSMSSHQEPEIRRVHLGVAVLRILALGIKKVQEFDFVDAPSPDAIDRAMKNLIQLGAVMMKNDVLELTEKGWSLVKLGIEPRLGKLILDSCDCCLWREGLALAAVMANASSIFCRVGNEEKKLKSDCLKVQFCHRDGDLFTLLSVYKEWEDVPQENKNKWCWNNSINAKSMRRCKETVLELEHCLTNELKIFVPSYWQWKPHVPTEHDKNLKKVILSSLAENVAMYSGYDRLGYQVALTGQHVQLHPSCSLLIYGQKPSWVVFGELLSISNQYLVCVTAFDYECLSTLSPPPLFDVSQMESQKLQVTVMTGFSSNFLKRFCGKANSSLLCFVSRIQKACMDQRISIEIDFDKGEIQLFASSEDMENISAFVMEALNSETKWFRDDCIEKCLYRGGPDVSPPLALFGAGAEIKHLELGKRYLTVEVFHTDARAFDDKELLMLFEKCASGICSFHKYAGIGKEGEDSEKWGRITFLTPEAAEKAVTELHELEFCGSLLKVSPSRPTFGSDHRMCSFPAVKAKVFWPRRYSKGFAIVKCAREDADFIVDDCSNLLIGEKIINCEIGRKYMDGVVISGLDKEISEPEILDILRTATNRRILGVFLVRGEAVTNPTDAACAEALLREIAPFMPSKNSLSNSCHVKVFCPEPKDYLMKAIITFDGRLHLEAAKALHHIQGKVLAGCLSWQKIQCQQMFHSSVSCPAPVYFVIKKQLDSLFKSFKHRNGVSYNLVRNENGSYRVQISANATKIVVELRKPLEQLMKGKTINHASLTPNILQLVFSREGITLMKSLQQKTGTFILYDRQSRNIRVFGPQDKVAVAEQQLVQSLLALHENKQLEIRLRGGDLPQDLMREVVEKFGSDLHGLKEKVPGAEFTINTRRHVLLVRGNEEEKKKVETIIFDTARSLSCSGLAERPEGEATCPICLCELEDCYQLEACAHGFCRLCLVEQCESAIKNRDVFPMCCAHEGCGTPILVTDLRRLLLSEKLDELFRASLGAFVASSGGTYRFCPSPDCPAVYQVSDPGTTAEPFFCGACYVETCTICHLEYHPSVSCERYREFKEDPDLSLKEWCKGKEHVKNCPACGYTIEKGEGCNHVECRCGRHICWVCLACFNFSDDCYGHMRSVHQAFV* 1765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01799 1764 CDD BRcat_RBR 1639 1690 - -
Eupl13g01799 1764 SUPERFAMILY RING/U-box 1550 1617 - -
Eupl13g01799 1764 FunFam RBR-type E3 ubiquitin transferase 667 773 - -
Eupl13g01799 1764 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 848 926 IPR011709 -
Eupl13g01799 1764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 802 IPR027417 -
Eupl13g01799 1764 SMART ha2_5 684 780 IPR007502 GO:0004386
Eupl13g01799 1764 Gene3D - 1067 1141 IPR012677 -
Eupl13g01799 1764 Gene3D - 667 770 - -
Eupl13g01799 1764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 300 464 IPR014001 -
Eupl13g01799 1764 PANTHER ATP-DEPENDENT RNA HELICASE 254 932 - -
Eupl13g01799 1764 SUPERFAMILY RNA-binding domain, RBD 1070 1141 IPR035979 GO:0003676
Eupl13g01799 1764 ProSitePatterns Zinc finger RING-type signature. 1571 1580 IPR017907 -
Eupl13g01799 1764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1550 1631 IPR013083 -
Eupl13g01799 1764 CDD DEXHc_RHA-like 309 462 - -
Eupl13g01799 1764 CDD Rcat_RBR_DEAH12-like 1711 1760 - -
Eupl13g01799 1764 ProSiteProfiles TRIAD supradomain profile. 1551 1764 IPR044066 -
Eupl13g01799 1764 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 273 465 - -
Eupl13g01799 1764 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 646 689 - -
Eupl13g01799 1764 Gene3D - 272 465 IPR027417 -
Eupl13g01799 1764 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 466 643 - -
Eupl13g01799 1764 Gene3D - 466 644 IPR027417 -
Eupl13g01799 1764 Pfam Helicase associated domain (HA2) 685 779 IPR007502 GO:0004386
Eupl13g01799 1764 Gene3D - 1666 1762 - -
Eupl13g01799 1764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 501 664 IPR001650 -
Eupl13g01799 1764 SMART helicmild6 526 624 IPR001650 -
Eupl13g01799 1764 SUPERFAMILY RING/U-box 1638 1692 - -
Eupl13g01799 1764 SMART ibrneu5 1622 1687 IPR002867 GO:0008270
Eupl13g01799 1764 SMART ibrneu5 1688 1752 IPR002867 GO:0008270
Eupl13g01799 1764 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1683 1761 - -
Eupl13g01799 1764 Pfam DEAD/DEAH box helicase 297 450 IPR011545 GO:0003676|GO:0005524
Eupl13g01799 1764 Pfam Helicase conserved C-terminal domain 504 623 IPR001650 -
Eupl13g01799 1764 SUPERFAMILY RING/U-box 1708 1756 - -
Eupl13g01799 1764 SMART ultradead3 288 472 IPR014001 -
Eupl13g01799 1764 ProSitePatterns Zinc finger C2H2 type domain signature. 1739 1760 IPR013087 -
Eupl13g01799 1764 Pfam IBR domain, a half RING-finger domain 1632 1687 IPR002867 GO:0008270
Eupl13g01799 1764 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 406 415 IPR002464 -
Eupl13g01799 1764 CDD SF2_C_RHA 467 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01799 Eupl-Chr13 37591616 37600624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01799 1570 1746 C3H Transcription Factor Family AT2G31770 26.596 1.68e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01799 K12818 - nnu:104604222 2447.93