Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01789 ATGATGAAGAGGCTTGGTAGCTCAGATTCCTTGGGTGCTATGATCTCCATCTGCCCTTCTACAGAAGAGAAGAGTTCAGGAGCCAACAACAACAACAACAACAGCCATGTCTACAGTAGAGGATCATTTCAATCCATGTTGGAAGGACTAGACGAAGAAGACTGTGTCGAGGAATCTGGTCATATCGCCGAGAAGAAAAGGCGACTAAGTGTTGATCAAGTGAAAGCCTTAGAAAAAAATTTCGAGGTCGAGAACAAGCTCGAACCAGAGCGAAAAGTGAAACTAGCCCAAGAACTAGGCTTGCAACCACGACAAGTTGCCGTTTGGTTTCAAAACCGACGAGCCCGGTGGAAAACCAAACAATTAGAGAGAGATTATGGGGTTCTGAAAGCAAATTTCGAAACTCTTAAGCAGAATTTCGACACTCTCCAACATGATAAAGAAACTCTACTTGCAGAGCTAAGAGAGTTGAAAACAAAGATCCAAGAAGAAAGCACAGAGAGCAAAATCTCAGTAAAAGAAGAGATCATGATATCTGAACCTGAAAACAAAGTTTCAGAGCAGATTAAGATCTGTACGACGGACAACAATGGAGTTGGAGTTTCTGTGTTTGGCGATTTCAAAGACGGATCATCGGATAGTGATTCAAGTGCGATTTTAAACGAAGAGAACAACCACAACATCACCAGCCCAAACGCGGCGATTTCTTCATCTGGGGTTCTTCAGCAACACCATTTACTTTTGCCTCCAGCTTCATCTTCTCTTAGATTCAACTGTTCTTCGCCTTCTTCTATAAATTGCTTTCAGTTCTCGGATTCGAGAGCAGTTTCGGCGAGTACCCACAAAACTTATCAGCCCCAGGTTGCCCAGCAGTTGGTGAGGATGGAAGAACACAATTTCTTTGGTGCAGAGGAGCACTGCAATTTCTTCTCTGATGATCAAGCTCCAACCCTTCAATGGTACTGTCCTGATCAATGGAACTAA 984 0.4339 MMKRLGSSDSLGAMISICPSTEEKSSGANNNNNNSHVYSRGSFQSMLEGLDEEDCVEESGHIAEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFETLKQNFDTLQHDKETLLAELRELKTKIQEESTESKISVKEEIMISEPENKVSEQIKICTTDNNGVGVSVFGDFKDGSSDSDSSAILNEENNHNITSPNAAISSSGVLQQHHLLLPPASSSLRFNCSSPSSINCFQFSDSRAVSASTHKTYQPQVAQQLVRMEEHNFFGAEEHCNFFSDDQAPTLQWYCPDQWN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01789 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 300 IPR045224 GO:0003700
Eupl13g01789 327 Gene3D - 60 127 - -
Eupl13g01789 327 SMART HOX_1 63 124 IPR001356 GO:0003677
Eupl13g01789 327 Pfam Homeobox associated leucine zipper 120 161 IPR003106 GO:0006355|GO:0043565
Eupl13g01789 327 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Eupl13g01789 327 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Eupl13g01789 327 CDD homeodomain 65 121 IPR001356 GO:0003677
Eupl13g01789 327 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Eupl13g01789 327 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Eupl13g01789 327 SUPERFAMILY Homeodomain-like 48 122 IPR009057 -
Eupl13g01789 327 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Eupl13g01789 327 Coils Coil 119 167 - -
Eupl13g01789 327 FunFam Homeobox-leucine zipper protein HAT5 58 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01789 Eupl-Chr13 37350024 37352391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01789 1 327 Homeobox Transcription Factor Family AT2G22430 42.935 2.95e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl13g01789 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01789 K09338 - nnu:104604320 427.172