Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01776 ATGCCGCCGCGCGCAGTGAGACGACCGTCCACTGCCACCGCACTGAAGAAAAAACTACCTGCGAAAGCCCCCGTTGAGACCAAAGAAGAAGCCAAGGAAACCGAGATCGTCGGACACAAGAACACAAACAAAGAAGAACACCGAGAACCCTCGCCACCCCCAAAAGAGGAGAAGGCATCTTTTCCGGTGGGTTATCACGATGTAGATAGATCGGAAAGGTTGGAGCTCGAAGACAACGATCCTCAGTCAGAGGTGGAAGAGGATGGTGGGGCCAATATAGGAATTGAAGAGCACCGAGATGAGATGGAAGAACACGAAGAAGAGAGGATTGATGGGGATGACATGATGGAAGGTGAGGAGGAGGAGGAGGTAGATGGCGGAGATGAACATGACGAAGAGGTCGATGGGGATGTGGATGGGGATGAAGAGGAGCACCATGATGTGGTGAAGGAGCGGCGTAAACGGAAGGAGTTCGAGATATTTGTTGGAGGATTGGATCGAGATGCCACCGAGGAGGATCTCACAAAGGTTTTTAGCCGCGTCGGTGAGGTCACTGGAGTAAGGCTTATGAAGAACCCCTTGACTCAGAAGAACAAGGGCTTTGCATTCCTACGCTTCGCGACTGTCGAGCAGGCTAAGCGTGCTATCAATGAACTTAAGCATCCAATGGTTAATGGGAAGCAATGTGGGGTGGCTCCAAGCCAGGACAGCGACACATTGTTTGTTGGTAACATATGCAAGACGTGGACAAAGGAAGTGTTCAAGGAAAAGCTTGCCCAATATGGTGTTGATAATTTTGAAGATTTGACATTGGTTGAGGACACTCGAAATGAGGGAACGAATCGGGGATTCGCTTTTCTGGACTTTTCTTCTCGGGCAGATGCCTTGGATGCATGCAAGCGCTTGCAGAAGAGGGATGTTGTGTTTGGTATGGATAGGACAGCGAAGGTTGCTTTTGCAGACACTTTCATTGAGCCAGATGATGAAATCATGGCACAAGTTAAGACAGTATTTGTTGATGGTCTACCTCCTACCTGGGACGAGGACCGTGTCAAAGAGCACCTCAAAAAGTTTGGGAAGATTGAAAAGGTTGAACTTGCCCGGAATATGCCGGCTGCTAAAAGAACGGATTTTGGTTTCATAACATTCGACACACATGATGCTGCCGTGGCTTGTGTTGAAGGTACCAATAATGCTGAACTTAGTGATGGTGATAGGAAGGTAAAGGTCAGAGCAAGGCTGTCAAGGCCACGCCAAAGAGGTAAGTCAGTAAAACATGCCCGAGGAGGTTATTTAATTGGGCGTGGTGGTGGTCGAGGTGGCAAGGCTCACTGGAACACTGGTATGCCCCGCATGGATTCCTGGAGGTTTGCAGGTCGCAGTGGACGAGGCATTCAAAGCCGTAGCACATACGGTGGTGGTTTCAAGAGGTCACTTGGTCCCAGGGATAGATATCCAGTTATGGATGTGGCCCCTGATAGAGTTGGAAGTAGACGGACATTGCCTTCTTTGGAGAGATCCTTTGATCGTAGGTCTCCTGGTCCAGCTTATGGAAAGAGCAGTTCAAAGAGGGACTATGTTCGACTTGACGAACCTTTTCCCAGGTCATCTGATTTTGTCGCTAGAGCTCCTACTGAGAGGCGCTCATCCTATAGGGATGCTTACCCTTTGCATGAATCAGAATACCTTGACAGTCCTCCAAGGAGTGCCTCTCGCAGTGCTGCTCGTAGACCTCCTCCTCTTTATGCTGAAGAAAACTATGGCAGATATATGGAGCGGCCCTCAAGCTATCGTGACAGTCATAGCCGTGATTACAGTTCTATTTCTGGCTCAAAGCGCCCTCATTCTGCAATAGAGGAACTTCATCCTCGCTATGCCGAATCTACACTTAGACAGCCAAAAGCTCGCTTCGACTATGGAGGGAGTGCCGCTGCTTTGCCGTACAGGGAAAGTGCTTATGGGAGCGAATCTGCAAGACTGAGTCGTGGTTCTCATCAAGGATATGATGGGGGTAGTCGGAGTTCCGCAGGACATTCTCATGGATTGTATGAGACGCGCACATCAAGTATGGTGTACAGCCGAGATGAGGTGAGCAGAGGTGATGCAGGAGGAATGTACTCCAGCGATGGCAGGGATTACATGTCCAGGGATTACATGTCTACTGGAGCGGATGTGGGTGCAGGTTCACACTCATCCATGTACTCTAGTCGTCGCATGAATGATGGCTACTCAAGTGGCAGAGGTTCAGGTTCATATTATTAA 2262 0.4947 MPPRAVRRPSTATALKKKLPAKAPVETKEEAKETEIVGHKNTNKEEHREPSPPPKEEKASFPVGYHDVDRSERLELEDNDPQSEVEEDGGANIGIEEHRDEMEEHEEERIDGDDMMEGEEEEEVDGGDEHDEEVDGDVDGDEEEHHDVVKERRKRKEFEIFVGGLDRDATEEDLTKVFSRVGEVTGVRLMKNPLTQKNKGFAFLRFATVEQAKRAINELKHPMVNGKQCGVAPSQDSDTLFVGNICKTWTKEVFKEKLAQYGVDNFEDLTLVEDTRNEGTNRGFAFLDFSSRADALDACKRLQKRDVVFGMDRTAKVAFADTFIEPDDEIMAQVKTVFVDGLPPTWDEDRVKEHLKKFGKIEKVELARNMPAAKRTDFGFITFDTHDAAVACVEGTNNAELSDGDRKVKVRARLSRPRQRGKSVKHARGGYLIGRGGGRGGKAHWNTGMPRMDSWRFAGRSGRGIQSRSTYGGGFKRSLGPRDRYPVMDVAPDRVGSRRTLPSLERSFDRRSPGPAYGKSSSKRDYVRLDEPFPRSSDFVARAPTERRSSYRDAYPLHESEYLDSPPRSASRSAARRPPPLYAEENYGRYMERPSSYRDSHSRDYSSISGSKRPHSAIEELHPRYAESTLRQPKARFDYGGSAAALPYRESAYGSESARLSRGSHQGYDGGSRSSAGHSHGLYETRTSSMVYSRDEVSRGDAGGMYSSDGRDYMSRDYMSTGADVGAGSHSSMYSSRRMNDGYSSGRGSGSYY* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01776 753 CDD RRM_SF 240 317 - -
Eupl13g01776 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 322 IPR000504 GO:0003723
Eupl13g01776 753 MobiDBLite consensus disorder prediction 461 619 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 725 753 - -
Eupl13g01776 753 Gene3D - 92 238 IPR012677 -
Eupl13g01776 753 Coils Coil 95 122 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 106 142 - -
Eupl13g01776 753 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 228 IPR000504 GO:0003723
Eupl13g01776 753 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 240 306 IPR000504 GO:0003723
Eupl13g01776 753 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 337 402 IPR000504 GO:0003723
Eupl13g01776 753 SMART rrm1_1 239 318 IPR000504 GO:0003723
Eupl13g01776 753 SMART rrm1_1 336 411 IPR000504 GO:0003723
Eupl13g01776 753 SMART rrm1_1 159 232 IPR000504 GO:0003723
Eupl13g01776 753 Gene3D - 239 321 IPR012677 -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 91 105 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 591 608 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 694 753 - -
Eupl13g01776 753 FunFam RNA recognition water-stress protein1 325 446 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 413 445 - -
Eupl13g01776 753 FunFam Heterogeneous nuclear ribonucleoprotein Q 238 321 - -
Eupl13g01776 753 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 17 734 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 1 150 - -
Eupl13g01776 753 SUPERFAMILY RNA-binding domain, RBD 152 236 IPR035979 GO:0003676
Eupl13g01776 753 MobiDBLite consensus disorder prediction 657 682 - -
Eupl13g01776 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 236 IPR000504 GO:0003723
Eupl13g01776 753 SUPERFAMILY RNA-binding domain, RBD 236 408 IPR035979 GO:0003676
Eupl13g01776 753 CDD RRM_SF 160 231 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 21 78 - -
Eupl13g01776 753 MobiDBLite consensus disorder prediction 541 559 - -
Eupl13g01776 753 Gene3D - 324 448 IPR012677 -
Eupl13g01776 753 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 335 415 IPR000504 GO:0003723
Eupl13g01776 753 CDD RRM_SF 337 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01776 Eupl-Chr13 37136212 37144880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01776 160 403 Eukaryotic Initiation Factors Gene Family AT1G71770 24.031 9.12e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01776 - - nnu:104608656 1039.25