Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01760 ATGGCTTACCAGCATTACCGATCGCAATTCGGCGACACGACGTTTACGAAGGTGTTCGTCGGAGGATTGGCTTGGGAGACGCCGACCGAGAATATGCATAGATATTTCGAGCAATTTGGTGAAATTCTCGAGGCTGTTATCATCACCGATAAGAACACCGGAAAATCTAAAGGATACGGATTCGTGACATTTTGTGACCCCGATTCGGCGGGGAGGGCTTGCATCAATCCGAACCCTGTGATCGATGGGAGGAGAGCGAATTGTAATATTGCTTCGTTGGGTCGGCCTCGACCTTCACCACCACGAGGTAGAACGCAAGGTGGTAACCCCTATCATGGAGCTGGACTGCAAGGTGCAACATTGTATAATCGAGTCGGAGCACCGTTACCTCCTCCACCACCACCACCACCACCACCAGCACCTTCAGTCTTTTATCCTCCGTACGGGTACGCCACCTACACGCCAGATTATGGATACCACCAAACTATGTACAACCCACACCTTCAACCACAACAATATTACCATCAAGTGTACGGAGCGTCATCATCAACCATTGGATCTGCATATTATTATGGGTATTCTTTGCAAGCATCAAGGGGAACTTTTTCTGCCCCCCATGCGCATAGTATTGGGGGACCCTCTTATCTGCACCATCCTGCGCAGGGGGAGGGGCCCTTCGCCACTTCTCCTCAACCAGCAGTTCCAGTAACATCGGCACAATCCGTTCCGTTGTCTACTGATTCACAGACTCCTCCACAAACCTCAACAACAATTGGAGTTGGAGTCAGTACTTCAGAGAATCCAGACATCTAA 813 0.5006 MAYQHYRSQFGDTTFTKVFVGGLAWETPTENMHRYFEQFGEILEAVIITDKNTGKSKGYGFVTFCDPDSAGRACINPNPVIDGRRANCNIASLGRPRPSPPRGRTQGGNPYHGAGLQGATLYNRVGAPLPPPPPPPPPPAPSVFYPPYGYATYTPDYGYHQTMYNPHLQPQQYYHQVYGASSSTIGSAYYYGYSLQASRGTFSAPHAHSIGGPSYLHHPAQGEGPFATSPQPAVPVTSAQSVPLSTDSQTPPQTSTTIGVGVSTSENPDI* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01760 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Eupl13g01760 270 MobiDBLite consensus disorder prediction 231 270 - -
Eupl13g01760 270 PANTHER BOULE-RELATED 5 244 - -
Eupl13g01760 270 MobiDBLite consensus disorder prediction 92 115 - -
Eupl13g01760 270 Gene3D - 3 111 IPR012677 -
Eupl13g01760 270 FunFam RNA-binding protein 24-B isoform X1 3 110 - -
Eupl13g01760 270 SMART rrm1_1 17 89 IPR000504 GO:0003723
Eupl13g01760 270 SUPERFAMILY RNA-binding domain, RBD 12 115 IPR035979 GO:0003676
Eupl13g01760 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Eupl13g01760 270 CDD RRM_RBM24_RBM38_like 16 91 - -
Eupl13g01760 270 MobiDBLite consensus disorder prediction 213 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01760 Eupl-Chr13 36870530 36874982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01760 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 4.39e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01760 K25006 - vvi:100253997 365.155