Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01747 ATGATGGATTCCAGCGGTTTTCGTCAGTTTCCCGGGGAAAAATCTGCCGCTGCTGAAATGATGGCGTCATTTTCTGGTACTTGCGCCGGAGATAGGGATGGTTTCCGGCAGATTCCTCTCGCGAGCGCCGATCCTCGAATTCCTCTCTTCAACCTCTCTATAATTCGCCAGAAAATGGACTCGCTTCAACAGTTCCTCTCCGAATCCGTGGATCGCAACACCTTGCTTGGCAAAGATCATATGGATATGGTGTCGAACGAGATTTCGTCCGCGATTCAGCAGGTCATCGTCAACGGAGCAGCTTTGCTCTCCTGCTCTCAACCGCAGAATCTCGGATCTCAAATTGGGGAAGGTACGGTTCTGATGGCTGGAAAAGCTCTAAATCACGCAGATCTGAATTCACTGGTCACCGGAACAGTAGCAGTAACAGATCCGATTCGTTCGAGTGCCAGAACGAGCTTCCAAATCTCCGGGAAAGCTCCGATAAGTTCTACTGTTACCGCAAAAGCAGTCGAACCAGTTGACTTAACGGTTCAGACGAGTTATCCGATTGTCGCACAGTCAACCAAATCGGTAGATATTGGATGTCGCTGGCCGAATAAACCGGATTTTAAGATCTCGATGAGTTCTTTGAGTCCCGAGAAGCTGAAAGAAGAAGAGTTGAAGGATGAGATCGAAGATGAAGGATGTGAAATTGTTGAGCTCGATGCAGTAGAAATACTCGCAGAGAACATTCACTTCTGTGAAATCTGCGGGAAAGGATTCAAGCGGGACGCGAATCTACGGATGCACATGCGCGCGCACGGGAACCAGTTCAAGACGCCGGAGGCCCTAGCGAAGCCGGACAGGTGCGCCGATTCCTCGACACGCAAAACGCGGTTCTCTTGCCCCTTCGTCGGCTGCAACCGGAACAAATCTCACAAGAAATTCCGTCCTTTGAAGTCGTCAATCTGCGTAAAGAACCACTTCAAGAGGAGCCATTGCCCGAAAGTGTTCTCCTGCAATCGCTGCAACAAGAAGAACTTCTCTGTTGTGGCTGATCTCAAGAGCCACCTCAAGCACTGTGGAGAATCGAAGTGGCGATGCTCGTGCGGCACAACTTTCTCCAGGAAGGATAAGCTTTTTGGGCACATGGCGCTGTTCGAAGGCCACATGCCGGCATTTACAGAAGAGGATGAAAAATCTAAGGGGCCAGTAGTGATGGAAGAAGATGAAGAAGAAGAAGAAGAAGAAACCCAATTGGAAGGAGAGTTTTCTGCAAATGGTTCGGATCAGGGGTTCTTCGATGGTCTGCTTGAGGGCTTTGGGGCGATTGAGGCAGACTGTTTGAACGATGTATTTGGTTCTCCTGGATTAGATACGGAAATGGAGAAGTTCTTTGAGATTCAATAG 1392 0.4928 MMDSSGFRQFPGEKSAAAEMMASFSGTCAGDRDGFRQIPLASADPRIPLFNLSIIRQKMDSLQQFLSESVDRNTLLGKDHMDMVSNEISSAIQQVIVNGAALLSCSQPQNLGSQIGEGTVLMAGKALNHADLNSLVTGTVAVTDPIRSSARTSFQISGKAPISSTVTAKAVEPVDLTVQTSYPIVAQSTKSVDIGCRWPNKPDFKISMSSLSPEKLKEEELKDEIEDEGCEIVELDAVEILAENIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPDRCADSSTRKTRFSCPFVGCNRNKSHKKFRPLKSSICVKNHFKRSHCPKVFSCNRCNKKNFSVVADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAFTEEDEKSKGPVVMEEDEEEEEEETQLEGEFSANGSDQGFFDGLLEGFGAIEADCLNDVFGSPGLDTEMEKFFEIQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01747 463 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 39 413 IPR044300 GO:0010044|GO:0010447
Eupl13g01747 463 Gene3D Classic Zinc Finger 244 268 - -
Eupl13g01747 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 273 IPR013087 -
Eupl13g01747 463 FunFam Zinc finger 45-like 243 269 - -
Eupl13g01747 463 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Eupl13g01747 463 SMART c2h2final6 360 384 IPR013087 -
Eupl13g01747 463 SMART c2h2final6 246 268 IPR013087 -
Eupl13g01747 463 SMART c2h2final6 294 327 IPR013087 -
Eupl13g01747 463 SMART c2h2final6 332 354 IPR013087 -
Eupl13g01747 463 Gene3D Classic Zinc Finger 320 390 - -
Eupl13g01747 463 SUPERFAMILY beta-beta-alpha zinc fingers 243 269 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01747 Eupl-Chr13 36599375 36601225 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01747 231 394 C2H2 Transcription Factor Family AT1G34370 64.072 2.08e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g01747 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01747 - - nnu:104605998 454.521