Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01738 ATGGGAAGGTCTCCTTGCTGTGATGAGAATGGCCTCAAGAAAGGCCCATGGACTCCTGAAGAAGACCAGAAGCTTGTCCATTACATTCAGAAAAATGGCCATGGAAGCTGGAGAGCCCTCCCTAAACTTGCAGGTCTTAACAGATGTGGGAAGAGTTGTAGGTTAAGATGGACAAATTACTTGAGGCCTGATATCAAGAGAGGAAAATTTTCCCAAGAAGAAGAACAGACTATTCTCAATCTTCATTCCATCCTTGGAAACAAGTGGTCGGCGATTGCGACGCATCTTCCCGGCCGAACTGATAACGAAATCAAGAATTTCTGGAACACTCATTTAAAGAAGAAGCTGATTCAAATGGGTTTCGATCCGATGACACATCGCCCCCGAACCGATCTTTTCTCGAGCTTACCTCATCTGATAGCTCTAGCAAATTTGAAGGACCTTATGGATCATAACCCATGGGAAGAACAAGCTGTGAGATTACAAGCAGAAGCTGTTCAGTTGGCTAGGCTTCAGTACTTACAGTACATACTTCAATCTACAGCTTCCATGCCTACTAGCTCAAACAACTTAACCAGCATTACAGACATGGATGCTTTCAACTTATTGAATTCGATATCGTCAATCAAAGAAAACTCAAATTTGAATTCATCCCAGTTGGAGAATCCCAGTTCATGTTCTCTTGGAATAGCTACTACTCATCATCAATCAGTCCATGATCAGATCACTTTCTCTCATTTACCAGACCTTCAAGTCATCCCTTGCAGTTTCCAGACATCTTTGAACAGTGAGATGGGTCAAGGTTCCAACTTTACAATGTTCAGCCAAGGAGAATCAACACCTAAATCTCCATGGATTCCTCCATCTCCTTCTCCTCCTCCTCCCCCCGCTATCCTTCTCGCTGAGACTTCGATCAGTAATCCTGGTGACGCTTGCAGCACTTCTAGTTATGGTGGAGGAACGCCGTCGTTTTGGCCTGAGCTCCTTCTTGATGACCCTTTTATCCATGAGATCTCTTAA 1020 0.4402 MGRSPCCDENGLKKGPWTPEEDQKLVHYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDLFSSLPHLIALANLKDLMDHNPWEEQAVRLQAEAVQLARLQYLQYILQSTASMPTSSNNLTSITDMDAFNLLNSISSIKENSNLNSSQLENPSSCSLGIATTHHQSVHDQITFSHLPDLQVIPCSFQTSLNSEMGQGSNFTMFSQGESTPKSPWIPPSPSPPPPPAILLAETSISNPGDACSTSSYGGGTPSFWPELLLDDPFIHEIS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01738 339 CDD SANT 69 112 IPR001005 -
Eupl13g01738 339 CDD SANT 16 61 IPR001005 -
Eupl13g01738 339 SMART sant 66 114 IPR001005 -
Eupl13g01738 339 SMART sant 13 63 IPR001005 -
Eupl13g01738 339 Gene3D - 69 116 - -
Eupl13g01738 339 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Eupl13g01738 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl13g01738 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl13g01738 339 Gene3D - 11 67 - -
Eupl13g01738 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl13g01738 339 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl13g01738 339 FunFam MYB-related transcription factor 13 66 - -
Eupl13g01738 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl13g01738 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl13g01738 339 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl13g01738 339 MobiDBLite consensus disorder prediction 275 294 - -
Eupl13g01738 339 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01738 Eupl-Chr13 36467287 36468653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01738 1 339 MYB Transcription Factor Family AT1G34670 54.865 3.79e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g01738 Myb_DNA-binding 7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01738 K09422 - ming:122070336 509.22