Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01712 ATGTCGCATTTTGGAAGATCTGGTCCTCCAGATATCAAAGACACATACTCTCTCCTCGTTCTCAACATCACTTTCCGAACCACTGCAGATGATCTCTTCCCTCTATTTGATAAGTACGGAAAGGTCGTCGATATCTTTATCCCGAGAGATCGAAGGACTGGAGATTCACGTGGGTTTGCGTTTGTTCGGTATAAGTATGCGGATGAGGCCCAGAAGGCGGTGGAGAAGCTCGATGGAATAAATGTTGATGGTAGAGATATTATGGTTCAATTTGCTAAATATGGGCCAAATGCGGAACCGATTAAGAAAGGAAGGATAATAGAGGTATTTCCAAAGACAAAAGGCAGGTCAAGAAGCCGCAGCCCTCGACCAAGGCATCGAGATGATTACCGGGATAGGGGTAGAAAGCGAAGTCGTAGTAGAAGTAGGGGTAGATCCGAGCGCGACAGGTACCGTGGAAGGGAAAAAGATTATCATCGTCGAAGCAGAAGCCGCAGTGTGAGTCCTGATTACCACAAAGGCCGTGGTCGAGGTAGGTATGATGACGAGCGACGGAGGAGTCGGAGCAGGTCATTTGACAGTGCTTCCCCTCCTCGGCGTAGTCCTAGTCCTCGGAGGAGTCCATCCCCACGCAGGATACCTCCTCCTAAGGTTGGAAGTCCCGAGAGACGAAGCCGTGATGAACGATCTCCAACTCCCAGAAGTGTTTCCCCGCGAGCTCGACCTGCTGATTCTCGAAGCCCATCACGTAATTCAGATGCTGAGGATTGA 771 0.4994 MSHFGRSGPPDIKDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGINVDGRDIMVQFAKYGPNAEPIKKGRIIEVFPKTKGRSRSRSPRPRHRDDYRDRGRKRSRSRSRGRSERDRYRGREKDYHRRSRSRSVSPDYHKGRGRGRYDDERRRSRSRSFDSASPPRRSPSPRRSPSPRRIPPPKVGSPERRSRDERSPTPRSVSPRARPADSRSPSRNSDAED* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01712 256 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Eupl13g01712 256 MobiDBLite consensus disorder prediction 217 234 - -
Eupl13g01712 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Eupl13g01712 256 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Eupl13g01712 256 SMART rrm1_1 17 90 IPR000504 GO:0003723
Eupl13g01712 256 CDD RRM_SRSF2_SRSF8 18 90 - -
Eupl13g01712 256 MobiDBLite consensus disorder prediction 105 256 - -
Eupl13g01712 256 MobiDBLite consensus disorder prediction 144 193 - -
Eupl13g01712 256 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 246 - -
Eupl13g01712 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Eupl13g01712 256 Gene3D - 4 102 IPR012677 -
Eupl13g01712 256 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01712 Eupl-Chr13 35767283 35770248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01712 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 2.39e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01712 K12891 - ming:122073857 265.388