Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01685 ATGGCTGCAGCTATAGATATCTACAGTAGCAGCATACCTGTATTCTCAGATCCCTTTAATGGGGAGCTCATGAAAGCACTGGAACCTTTTATCAAAGGTGCTTCATCAAACTCCTCTATAACCCCATCTCCCTCTTCTTCATCTTCTTCTCCTTCTCCATCTTCTTACTCTTTCTCTTCTTCTTCTCCTCCTTCTATCTCTTCTTGTCAGTCCAACTTTTGCCTGGACTGTTGCTCAACTTCGACTACCCAAATGTTTTCGAGTCATCATGAACAACTGGGTCTCGAGCAATCGGGTTCAATCGGGCTTAACCATCTTAGCCCAGCTCAGGTTCAGCAGATTCAAGCCCAGATCTATCTCCAACAACAACAACAACACATGGCTGCCATGGCTGCAACTTCAATTCAGAACCAGAAGCTAAGACAATTGCAGCAGCAGCAGCAGCAACAGAGCACCATTAATTTCCTCAGCCCGAAAGCTATCCCCATGAAGCAAGTGGGTTCTCCTCCAAAACCCACAAAGCTTTACAGAGGGGTAAGACAACGGCATTGGGGGAAATGGGTTGCAGAGATTCGACTACCCAAGAACCGTACTCGGCTTTGGCTCGGCACCTTCGACACTGCAGAAGAGGCAGCTTTGGCTTACGATATGGCTGCTTATAAGCTCCGGGGAGAGTTTGCGAGGCTGAATTTCCCGAATCTCCGGCATCAAGGTTCTCATGTCGGAGGGGAATTCGGTGATTACAAACCTCTTAACTCCCCCGTCGACGCGAAGCTTCAAGCGATTTGTCAAAGCATGGCTAATTCTCAGAAACAGGGGAAATCAGAGAAACCCATTTCCGATTCGAAGAAGAAGCCGATCAACGAGCAATCACAGTTGGGTTCAATGGTACCTGCTCTGCCGCAGTCAGTGATGGTTTTGGAAAATTCATCGAAAGACGAATTTGGGTTTTCGGGATCTAAGGATTGTAAGGTGGAGACCTCGTCATCGCCGTCGTTTTTGGAGAGCGATGAGTCTGCTGGGTCTTCGCCTGCATCCGATATCAAGTTCCCGGATTTCACAGAAACGCCATGGGATGAGTCGGAAGACTTTTTGTTGCAGAAGTTCCCTTCTTTGGAAATCGATTGGGAAGCTATCCTTTCTTAA 1146 0.4756 MAAAIDIYSSSIPVFSDPFNGELMKALEPFIKGASSNSSITPSPSSSSSSPSPSSYSFSSSSPPSISSCQSNFCLDCCSTSTTQMFSSHHEQLGLEQSGSIGLNHLSPAQVQQIQAQIYLQQQQQHMAAMAATSIQNQKLRQLQQQQQQQSTINFLSPKAIPMKQVGSPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDMAAYKLRGEFARLNFPNLRHQGSHVGGEFGDYKPLNSPVDAKLQAICQSMANSQKQGKSEKPISDSKKKPINEQSQLGSMVPALPQSVMVLENSSKDEFGFSGSKDCKVETSSSPSFLESDESAGSSPASDIKFPDFTETPWDESEDFLLQKFPSLEIDWEAILS* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01685 381 CDD AP2 174 234 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 ProSiteProfiles AP2/ERF domain profile. 175 232 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 MobiDBLite consensus disorder prediction 34 61 - -
Eupl13g01685 381 MobiDBLite consensus disorder prediction 316 355 - -
Eupl13g01685 381 PRINTS Ethylene responsive element binding protein signature 176 187 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 PRINTS Ethylene responsive element binding protein signature 198 214 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 MobiDBLite consensus disorder prediction 321 343 - -
Eupl13g01685 381 Pfam AP2 domain 176 225 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 17 379 - -
Eupl13g01685 381 SMART rav1_2 175 238 IPR001471 GO:0003700|GO:0006355
Eupl13g01685 381 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Eupl13g01685 381 MobiDBLite consensus disorder prediction 267 295 - -
Eupl13g01685 381 Gene3D AP2/ERF domain 175 233 IPR036955 GO:0003700|GO:0006355
Eupl13g01685 381 FunFam Ethylene-responsive transcription factor 2 174 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01685 Eupl-Chr13 35328263 35330338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01685 1 381 AP2-EREBP Transcription Factor Family AT1G78080 47.583 1.17e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl13g01685 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01685 K09286 - ming:122066459 435.261