Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01658 ATGGGTCGTGTTAAACTCCAGATTAAGAGAATAGAAAACAACACAAATCGTCAGGTTACATTTTCAAAGCGTAGGAATGGACTTATTAAGAAGGCTTATGAGCTTTCTATACTTTGCGACATCGATATCGCTCTTATCATGTTTTCTCCCTCGGGACGCCTTAGTCACTTCTCCGGCAAGCGAAGGATCGAAGATGTTCTTACTCGCTACATAAATCTTCCTGACCATGATAGAGGAGGTGTTGTTCAAAATCGAGAGTATTTGTTCAGGACCCTAAAGAAACTCAAGAGTGAAAGTGACATTGCTCTTCAACTAGCCAATCCCGCGGCTGTTAACTCTAACGTAGAGGAGCTCCAACAAGAAATCACTAGGTTTCAACAACAAATTCAGGTGGTAGAGGAACAGCTAAGGATTTTTGAGCCGGACCCACTAAGGATGACGTCGACGGGTGAACTTGAATCATGCGAGAAGAACTTAATGGAGACATTGACACGTGTTACACAGAGAAAGAAATATTTGTTGAGTAATTACCATTCATCTTCTTATGATCCGTCAAGTATACAGATGTATTTGGATTCGCAAGAGGCCGGGATGCCATCCTCATTTGAGAACGAGGTTGTAAATTGGATTCCCGAGAATACACACAACCCCACCCAAATTTTCGTTGGATCTGATTCTTTGATTTCTCTAAGGGATCATTCATCCACAGTGTATGATCCATTGTCGCATGGGGCAAACTTAAATGTGGACCCTCGCAGCATGGGAGAGTGCCATGTCAACAACCCAAGTGATGGTAACCTTCCATCGTGGCACCAGGCATTCACGTCAACCGAGCTCCTTTCTGCTCTCATGCCATCAACTTCTTTTCCTCTAATTCAGCAAGGAATGGTGGGACCGAACATGACATCAATGATGCCACGTGAGCAGGTGGAGAACCCACACAATTGCTCGCACGTGCCGCAACAAAGTAACGATGGTGCCACTTATGAGAGCAACGTCCCCCAACAGCTTTAA 1014 0.4448 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGKRRIEDVLTRYINLPDHDRGGVVQNREYLFRTLKKLKSESDIALQLANPAAVNSNVEELQQEITRFQQQIQVVEEQLRIFEPDPLRMTSTGELESCEKNLMETLTRVTQRKKYLLSNYHSSSYDPSSIQMYLDSQEAGMPSSFENEVVNWIPENTHNPTQIFVGSDSLISLRDHSSTVYDPLSHGANLNVDPRSMGECHVNNPSDGNLPSWHQAFTSTELLSALMPSTSFPLIQQGMVGPNMTSMMPREQVENPHNCSHVPQQSNDGATYESNVPQQL* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01658 337 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Eupl13g01658 337 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Eupl13g01658 337 Coils Coil 115 135 - -
Eupl13g01658 337 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Eupl13g01658 337 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Eupl13g01658 337 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 MobiDBLite consensus disorder prediction 301 337 - -
Eupl13g01658 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Eupl13g01658 337 FunFam MADS-box transcription factor 41 13 92 - -
Eupl13g01658 337 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01658 Eupl-Chr13 34918239 34923210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01658 1 335 Type I MADS-box Gene Family AT1G22130 51.009 2.78e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl13g01658 SRF-TF 1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01658 - - msin:131242205 511.916