Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01645 ATGGATTCTATATCAGAATTCTTCTATGACCTCTACAGAAATTCCATCATCATATTCTCTCTATTGCTTCTTGAATTAATGATTTTGATCAAACGGGTCATGACGAATGTGTGGAAGTATAACAAGCATCTGATCACGACGCTTCGATATCTAGCGTTGATCGAAGAAAAGCACCCGGCGATTCGTTATAGGAACGAATCAAGACTAGACATGATCGAATGCGCTGTTTGTTTATCCAAATTGGAGGAAGGAGAACAGATCAGGGAGCTGCAATGCAGGCATGTGTTTCACAAGAATTGTGTAGATAAGTGGTTACAAAACAATCGGGCCACATGCCCGCTATGTCGGAGTTCCGTGTTGCCCGAAGAGATTGATCGTAGCGAGCAAGATCAGTATGATGGGGATGAGGAGTTGTTTTTGTTGTGGCATGTCTTACATGGAAATGTGCATGGACTTGAATAA 462 0.4199 MDSISEFFYDLYRNSIIIFSLLLLELMILIKRVMTNVWKYNKHLITTLRYLALIEEKHPAIRYRNESRLDMIECAVCLSKLEEGEQIRELQCRHVFHKNCVDKWLQNNRATCPLCRSSVLPEEIDRSEQDQYDGDEELFLLWHVLHGNVHGLE* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01645 153 SMART ring_2 74 115 IPR001841 -
Eupl13g01645 153 SUPERFAMILY RING/U-box 55 121 - -
Eupl13g01645 153 PANTHER - 1 148 - -
Eupl13g01645 153 Pfam Ring finger domain 73 116 IPR001841 -
Eupl13g01645 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 121 IPR013083 -
Eupl13g01645 153 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Eupl13g01645 153 FunFam Putative RING zinc finger domain superfamily protein 51 121 - -
Eupl13g01645 153 CDD RING-H2_PA-TM-RING 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01645 Eupl-Chr13 34756235 34757284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01645 73 135 C3H Transcription Factor Family AT1G15100 49.206 3.17e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01645 K16282 - tcc:18611643 155.992