Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01642 ATGGCGGATCACGCGAGTTCTTCTCCTCTCATTGCTCCTCCTCCGATCACCGAACCAGAGGAGATCGACCTGGAAGCAGGACCGACCGAGCAAATACAGTGCAGAATCTGCCTTGAAACTGATGGCAGGGATTTTATTGCTCCTTGCAAGTGCAAAGGAACCTCCAAGTATGTTCACCGTGAATGTTTGGATCATTGGCGGGCCGTAAAAGAAGGATTTGCATTTGCTCATTGCACAACCTGCAAGGCCCCTTACCACTTGAGAGTGCACGTTCTTGCAGATAGGAAATGGCGAACCTTGAAGTTCCGTTTCTTTGTGACTAGAGATATAATATTCATTTTTGTGGCTGTTCAACTTATAATTGCTTCTTTGGCATATTTGGTGTATTTAATTGATGGTCACCAGCAATTCTGGCTTCGTTTGGTCTGGGGTTTCGATAGTGTACTTAGTTTCTTCTACATATGTGGAGCCCTACTGTTTTTTGCTCTGCTGGGATTGTCTGGGTGCTTCATAACTTGTTATGATCGAAGAGTGCGCAATGATCTAGCCCAGCCATGTCGAGAATTGTGTCTTTGTTGCTGCCAGCCTGGAATGTGTGCAGACTGCCATTTACCTGGCACTCTTTGTATGTGGACTGATTGTACCACATGCTTTGAAGGTTGTGCGAGTACAGTGGGTGAATGTGGTTTCTTAGGGGGTGCTGGCGAAGCGGGTTTACCATTACTATTAATCATGGGTTTGATTGTGCTGGGACTGTTTACTGTAATTGGCATATTCTACAGCGTACTTGTGGCTACTATGGTCGGGCAACGCATTTGGCAGCGGCATTATCACATACTTGCAAAAAGGATGCTTACAAAAGAGTATGTTGTGGAGGATGTTGACGGTGAGATGACAGACTCTGATTGGTCCCCTCCAACCCTCCCACCGGAGCACATTCAACAGTTGAAGACACTTGGTCTTCTGTAA 969 0.4613 MADHASSSPLIAPPPITEPEEIDLEAGPTEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHVLADRKWRTLKFRFFVTRDIIFIFVAVQLIIASLAYLVYLIDGHQQFWLRLVWGFDSVLSFFYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFEGCASTVGECGFLGGAGEAGLPLLLIMGLIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPPTLPPEHIQQLKTLGLL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01642 322 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Eupl13g01642 322 MobiDBLite consensus disorder prediction 1 20 - -
Eupl13g01642 322 CDD RING_CH-C4HC3_MARCH 34 82 - -
Eupl13g01642 322 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 321 - -
Eupl13g01642 322 SMART ringv_2 33 82 IPR011016 GO:0008270
Eupl13g01642 322 SUPERFAMILY RING/U-box 29 86 - -
Eupl13g01642 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 95 IPR013083 -
Eupl13g01642 322 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01642 Eupl-Chr13 34721331 34735513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01642 1 322 C3H Transcription Factor Family AT2G22120 82.716 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01642 - - mof:131160524 592.038