Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01636 ATGGCGAAGAAGCGAAAGGTCGAAGAAGAGCTCGACACGGTCGACTCTGAGCCCGACATAAACGATTCCGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGCAGGAGCATGAGGAGCAGGAGCATGAGGAGAACGATGACGACGACGACGACGACGAAGACCTCACGAAGCTTCTCGAGCCCTTCAGCAAAGAGCAACTCATTGATCTACTTCGCAAGACCGCGTCGAACAATCCCAAAGTTCTCGAAGAAATCAACAGAGTCGCAGACCGTGATCCGGCTCACCGTAAGATCTTCGTACATGGACTAGGTTGGGAGACCACATCCGAGAAACTCCGAGATTTCTTCTCCAAGTTCGGCGAGCTCGAAGACTGCAACGTTGTCGTTGACAAGGTCACAGGTAAATCGAAGGGCTACGGATTCTTACTCTTCAAGCACCGTCGAAGCGCTCAGAAAGCCCTAAAAGAACCTCAGAAGAGAATTGAAAGTCGGATGACGGCTTGCCAGCTTGCGTCAGCGGGTCCCGTCAATCCTTCGCATTCGAATTCGCATCCCCAGCATCAGCAGCAGCAGCAGCAGCAGCAGATGCATTCAAATTACCATCCATCACAGGACACGCTACCGAGGAAGATTTATGTGGGTAATGTGCATTCTGAGATTCCTGCTGATAGGTTGCTTGCTTTTTTTTCAAAATATGGGGAAATTGAAGAGGGTCCGTTAGGGTTTGACAAGCTAACCGGGAAGCCGAAAGGGTTCGCACTTTTTATTTATAAGACCGTGGAAGGGGTGAGAAAAGCTCTAGAAGAACCCAATAAGAACTTTGAAGGTCACCAATTGTATTGCCAGAAGGCGACTGATAGCCACAAGCAAAAGGCCGCAGCTGCTGCTATAGCTGCCGCTCCTGGGAATGTAAGTGGTGGGGGGTTTATTGCACAGGGTGGTGTGGGTTTTGGTGCAGCGGGTGGTGCGGGTTTTAATGCGCCAAATGGGGCTATGGCTCACCAGGCTTCTGCAGCGTCCGCTGCATTGTTAGGACACGGGCTTCTGAGTGGAGCCTTGCCATTCGGTCAGGGAGTTCCACCAACTCAGGCGGCTCTTGCTGTACTGGCTGCTGCTGGGCAAAATCCGGCTGCGTTTGGAGTCTCTCCTGCTGTTCTTGCATCGTTGAACCCGGCTTTGGCAGCAGCAATGAATGCAGCGCCATCGTCAGTATCATCGTCGACAATGCCGGGTTATGGTATGGGGAACACAGGTTATCAGAATCCACAAGCTCATCAGGTTAATAATTCATATCATGGTGGGCCAACGGGGCAAGGTCCTGCACCAAGGCCACATTCTGTGGTGGGACCCATGGGAGGATATGTAGCACGTTAG 1371 0.5208 MAKKRKVEEELDTVDSEPDINDSEEEEEEEEEEQEHEEQEHEENDDDDDDDEDLTKLLEPFSKEQLIDLLRKTASNNPKVLEEINRVADRDPAHRKIFVHGLGWETTSEKLRDFFSKFGELEDCNVVVDKVTGKSKGYGFLLFKHRRSAQKALKEPQKRIESRMTACQLASAGPVNPSHSNSHPQHQQQQQQQQMHSNYHPSQDTLPRKIYVGNVHSEIPADRLLAFFSKYGEIEEGPLGFDKLTGKPKGFALFIYKTVEGVRKALEEPNKNFEGHQLYCQKATDSHKQKAAAAAIAAAPGNVSGGGFIAQGGVGFGAAGGAGFNAPNGAMAHQASAASAALLGHGLLSGALPFGQGVPPTQAALAVLAAAGQNPAAFGVSPAVLASLNPALAAAMNAAPSSVSSSTMPGYGMGNTGYQNPQAHQVNNSYHGGPTGQGPAPRPHSVVGPMGGYVAR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01636 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Eupl13g01636 456 Coils Coil 20 47 - -
Eupl13g01636 456 Gene3D - 177 297 IPR012677 -
Eupl13g01636 456 SMART rrm1_1 96 168 IPR000504 GO:0003723
Eupl13g01636 456 SMART rrm1_1 209 281 IPR000504 GO:0003723
Eupl13g01636 456 SUPERFAMILY RNA-binding domain, RBD 181 289 IPR035979 GO:0003676
Eupl13g01636 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 172 IPR000504 GO:0003723
Eupl13g01636 456 SUPERFAMILY RNA-binding domain, RBD 88 176 IPR035979 GO:0003676
Eupl13g01636 456 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 21 298 - -
Eupl13g01636 456 MobiDBLite consensus disorder prediction 413 434 - -
Eupl13g01636 456 Gene3D - 10 176 IPR012677 -
Eupl13g01636 456 MobiDBLite consensus disorder prediction 13 55 - -
Eupl13g01636 456 MobiDBLite consensus disorder prediction 170 203 - -
Eupl13g01636 456 MobiDBLite consensus disorder prediction 1 57 - -
Eupl13g01636 456 MobiDBLite consensus disorder prediction 413 456 - -
Eupl13g01636 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Eupl13g01636 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01636 Eupl-Chr13 34664552 34665922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01636 203 303 C2H2 Transcription Factor Family AT2G19380 32.673 4.68e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01636 K12741 - nnu:104600047 535.413