Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01624 ATGAGAGTCATGGAGCGAGGGATCGCAATTTCGGTTCTGCTCTGGTTGATTCTGGTGTTTCATCCATTAACAACGATCTATGCGAATACGGAAGGTGACGCTTTGCATAGCCTACGGTCCAATTTACAAGATCCTAGTAATGTGCTGCAGAGTTGGGATCCTACACTTGTCAATCCGTGCACGTGGTTTCATGTTACATGCAACAATGATAATAGTGTTATAAGAGTTGATCTTGGAAATGCGGAGTTATCTGGTCAACTGGTTCCGCAACTTGGTCAGCTTAAAAATTTGCAGTACTTGGAACTTTATAGTAACCACATAAGTGGAATAATTCCTCCTGAACTTGGGAACTTGACAAGCTTAGTGAGCTTGGATCTTTACTTGAATAACTTCACTGGTGGCATTCCAGAGACATTGAGCAAGCTGACGAAGATGCGTTTCCTCTATTTTTATTTATCTATTATCATTCTGATGATTCTGGAACTTAAACATTGTGTTGTCTTGGAATGCCTGTGGAAGGATAGCCGGCTTAACAACAACAGCCTGACGGGTGTCATACCTTTTTCCTTGACCACTGTTACATCACTCCAAGTTTTGGATCTATCCAACAACCGTCTGGGAGGACCAGTTCCAGACAATGGTTCCTTTTCACTATTTACTCCCATCAGTTTTAATAATAACTTACAACTATGTGGCCCAGTAATTGGTGTTCCTTGCCCCGGTTCTCCTCCTTTTTCTCCACCTCCTCCATTTCAAACTCCACCACCAACTTCATCTCGAGGAAGTGCCCCTAGCACTGGAGCGATTGCTGGAGGAGTGGCTGCTGGTGCTGCTTTACTGTTTGCTGCCCCTGCGATTGGGTTTGCATGGTGGCGTCGACGGAAACCACAAGAAAATTTCTTTGATGTACCAGCTGAAGAGGATCCAGAAGTTCATCTGGGACAGCTCAAAAGGTTCTCCCTGCGAGAACTACAAGTTGCAACTGATACTTTTAGCAACAGAAACATTCTGGGTAGAGGTGGGTTTGGTAAGGTGTACAAGGGACGCCTAGCAGATGGTTCATTAGTCGCAGTAAAACGACTAAAAGAAGAGCGTACACCGGGTGGGGAGCTGCAGTTTCAGACAGAAGTAGAGATGATCAGTATGGCTGTGCATCGGAACCTCCTGCGTTTACGTGGTTTCTGCATGACCACGACTGAACGGTTGCTTGTATATCCCTACATGGCTAATGGCAGCGTTGCATCATGTTTAAGAGAACGTTCAGAATCGGACCCTCCACTTGATTGGCCAACCCGGAAGCTAATTGCATTGGGATCTGCAAGAGGGCTTTCTTATTTGCATGATCATTGCGACCCAAAGATTATCCACCGTGACGTAAAAGCTGCAAATATTTTGTTGGATGAGGAGTTTGAGGCAGTTGTTGGGGACTTTGGGTTGGCTAAACTTATGGACTACAAGGATACCCATGTGACCACTGCTGTGCGAGGCACAATCGGGCATATTGCCCCAGAATACCTCTCCACTGGAAAGTCTTCAGAAAAGACTGATGTTTTTGGGTACGGGATCATGCTTCTGGAGCTTATCACTGGACAGAGAGCATTTGATCTTGCTCGGCTTGCAAACGATGACGATGTTATGTTGCTTGACTGGGTAAAAGGACTTCTGAAAGAGAAGAAGTTGGAGATGCTGGTTGATCCTGATCTACAAAACAACTACATTGAGGATGAAGTTGAGCAGCTGATCCAGGTAGCACTGCTTTGCACGCAAAGTTCTCCAATGGAGCGGCCCAAGATGTCAGAGGTAGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAGAGGTGGGAGGAGTGGCAGAAGGTGGAGGTGGTTCGCCAGGAGGTCGAACTCGCCCCCCACCATAACTCCGAATGGATCATTGACTCCACCTACAACCTCCATGCTGATGAATTGTCTGGCCCGAGATAA 1965 0.4631 MRVMERGIAISVLLWLILVFHPLTTIYANTEGDALHSLRSNLQDPSNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAELSGQLVPQLGQLKNLQYLELYSNHISGIIPPELGNLTSLVSLDLYLNNFTGGIPETLSKLTKMRFLYFYLSIIILMILELKHCVVLECLWKDSRLNNNSLTGVIPFSLTTVTSLQVLDLSNNRLGGPVPDNGSFSLFTPISFNNNLQLCGPVIGVPCPGSPPFSPPPPFQTPPPTSSRGSAPSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQENFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNRNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTTTERLLVYPYMANGSVASCLRERSESDPPLDWPTRKLIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIEDEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKVEVVRQEVELAPHHNSEWIIDSTYNLHADELSGPR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01624 654 Pfam Protein kinase domain 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01624 654 SMART serkin_6 331 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01624 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Eupl13g01624 654 FunFam Somatic embryogenesis receptor kinase 1 300 407 - -
Eupl13g01624 654 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Eupl13g01624 654 FunFam Somatic embryogenesis receptor kinase 1 27 155 - -
Eupl13g01624 654 Gene3D Phosphorylase Kinase; domain 1 300 407 - -
Eupl13g01624 654 ProSiteProfiles Protein kinase domain profile. 331 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g01624 654 SUPERFAMILY L domain-like 30 228 - -
Eupl13g01624 654 FunFam Somatic embryogenesis receptor-like kinase 1 408 625 - -
Eupl13g01624 654 MobiDBLite consensus disorder prediction 242 257 - -
Eupl13g01624 654 Gene3D Transferase(Phosphotransferase) domain 1 408 625 - -
Eupl13g01624 654 MobiDBLite consensus disorder prediction 242 267 - -
Eupl13g01624 654 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 616 - -
Eupl13g01624 654 Gene3D Ribonuclease Inhibitor 27 240 IPR032675 -
Eupl13g01624 654 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Eupl13g01624 654 SUPERFAMILY Protein kinase-like (PK-like) 310 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01624 Eupl-Chr13 34411194 34427584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01624 4 654 Receptor kinase-like Gene Family AT1G71830 81.595 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Eupl13g01624 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01624 K13418 - ming:122082814 1055.05