Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01622 ATGACAGGAAGAAGACGGCAATTCAGCCCGGTCGGAAGCCCGTCTTCGGACACCGAGTCCGGCACCATTGCTGGTAATCTCTTGGACAACACTAAAGATCAAGACAGGCTCCTTCCGATCGCTAACGTTAGTCGTATCATGAAGAAATCACTCCCCGCAAACGCAAAGATATCGAAAGAAGCCAAGGAGACTGTACAGGAGTGCGTGTCGGAGTTCATCAGCTTCATAACTGGTGAAGCATCAGATAAGTGTCAAAGAGAGAAGAGAAAGACGATCAATGGTGATGATCTTTTATGGGCCATGACTACTCTCGGGTTCGAGAACTACGTCGGGCCTCTAAAGTTGTACCTTAACAAGTATAGGGAGACAGAAGGGGAGAAGAACTCCTTGGCTAGACAAGGAGATCATCAGTCTTCTACTGAAGAGACTACTACTAATACTACTAGTACTAACCATGGTGTTAATGGAGTTAACAAAGTTGCTAATCCTATAGCGAATAACGCAAATCTTTCAGGTTTCAATGGCGGGTTTTATTCGTTTGGCGCTGGTCCAGTAATTCCAATGACCTTTGGAGATGGAGGAAGGATCATCGGCTTCGGCGAGAACTCGAAAATGGGTGCTTTTCATATGGGTAGAATCCATGAAAATGGAGATGGAATTGCTAACAGGGCTATAGCTAATCATCTTCATGGTGTAGAATGGTAG 705 0.4525 MTGRRRQFSPVGSPSSDTESGTIAGNLLDNTKDQDRLLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNKYRETEGEKNSLARQGDHQSSTEETTTNTTSTNHGVNGVNKVANPIANNANLSGFNGGFYSFGAGPVIPMTFGDGGRIIGFGENSKMGAFHMGRIHENGDGIANRAIANHLHGVEW* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01622 234 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 29 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Eupl13g01622 234 Coils Coil 113 133 - -
Eupl13g01622 234 FunFam Nuclear transcription factor Y subunit B-3 27 151 - -
Eupl13g01622 234 MobiDBLite consensus disorder prediction 127 155 - -
Eupl13g01622 234 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Eupl13g01622 234 SUPERFAMILY Histone-fold 34 146 IPR009072 GO:0046982
Eupl13g01622 234 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Eupl13g01622 234 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Eupl13g01622 234 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Eupl13g01622 234 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl13g01622 234 MobiDBLite consensus disorder prediction 1 28 - -
Eupl13g01622 234 MobiDBLite consensus disorder prediction 132 155 - -
Eupl13g01622 234 Gene3D Histone, subunit A 27 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01622 Eupl-Chr13 34378103 34378977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01622 30 137 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.404 5.23e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl13g01622 CBFD_NFYB_HMF 1.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01622 K08065 - msin:131225933 318.161