Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01606 ATGGCCACCAGCTCTCAACACCGTTGCGTATTCGTTGGGAATATACCCTATGATGCGACTGAAGAGCAGCTTATACAAATATGCGAAGAGGTTGGCCCTGTTGTATCATTCAGATTAGTCATCGATAGAGAGACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAGACGGCTCTAAGTGCTCGTCGCAATCTTCAGGGCTATGAGATTAATGGCCGCCAATTACGAGTTGACTTCGCTGAAAATGATAAAGGTGCTGACAGAAACCGTGAACAGGGTCGTGGTGGACCAGGGTTGACTTCAAATGTTGATGCTCAAAAACCATTAGGTGGTCCGGCTATACTCGGGGATTCTGCTTTATTTCAGCCAATTGGTCTCCCATTAGCTGCTACTGCTGCATCTGTCATGGCAGGAGCTTTGGGTGATGTTCAGAATGGTAGCATGTCCTCAAAGCAAAATGGTTTGCAAAGTCAATCTGGTTTGGGCAATGATCCCTTAACACATTATCTGGCTAAAATGTCGAGGAACCAGTTGTATGAGATTATGTCGGAGATGAGGGTAATGGTTACACGGAACAAGGAACTAGCTCGTCAACTGTTGCTATCGAGTCCACAACTGCCAAAAGCTCTTTTTCAGGCACAGATTATGCTTGGGATGGTGACGCCACAAGTGTTGCAGATGCCAAATATTAGGCAGTCACCCGGTTCTCTCTTGCAGCCTCCATTGCAAGATGGCGTACAGGATCAGAAGGCAGCAGTGCTTCCACCTCATCCTGGACAAACGCCTCTCACACAGAATAAGATGCAGCTTGGGACGATGCCCAGGGTACAAGAAGGTCAAGGTTCTGCTGTGCCTCAAAATCCTTTGGTTAATAATCAGCCTTCTGCACTTCCATTTCAGCAAGTTCCTCTGCAACCTCGAATTCAGCTTCCTCAGCAAGGACAGAGTCAATTTTTACAGCCGACAACAATGCCAGGGCTGTCTGGAGTTTCAACAGTTCCATCTATACGGCCTTTCACTGGTTTTTCTACTCGACCACAAACTCCAGCTTTGGAAACTTCCACTGCTTTGAAGCAGCAAGTGCAACCCCCTCTGCTAGAGAATCCTAGATCGGTTGTAGCTGCAAGTTTAGGGCATAATAGTCAGTTGGTTCTTCCAAATGCAACTCCTCAGCATTCACTTTTGCCTCGTCCTCTCTTATCACAACTAAGCTTTCAGCCTAATTCATCAAATTCTATGATACTACCGGGCGTACCAGAGACAGTTAACAAGCATGCTGAAAGATCTGCTCAAGTTACTGATGATGCAACACGGGTTCCCAGAAGTAACAATTATTCAAACTTGCCTTTGGGGTTGTCTGAGCAAGCAAGCATGGTTGGTGATACTTCAGAACCTATGATTCATCCATCTAAGATGGCGAGGTTGGAAGATGGACGGAGTGCCTTACGCACTATGATGAGTCAGAACACTTTCACTATGAGTGGATCTGGAGCAACCCAAGGTTTTGGAGCCGGCTCATTGACTGCCAACCGAATTCCTAGTGCTGAAGGGCTGCAGCATTCTGAGAAACAAGCTCCTCAGTTGCAGCTTCCACCTGAGGTGGAGTCGGCCTTACTGCAGCAAGTAATGAGCCTGACATCAGAGCAGTTGAGTTCGTTGCCTCCGGAGCAGCGGCAACAAGTGATCCAGCTCCAACAGATGTTCCGATGA 1722 0.4715 MATSSQHRCVFVGNIPYDATEEQLIQICEEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLTSNVDAQKPLGGPAILGDSALFQPIGLPLAATAASVMAGALGDVQNGSMSSKQNGLQSQSGLGNDPLTHYLAKMSRNQLYEIMSEMRVMVTRNKELARQLLLSSPQLPKALFQAQIMLGMVTPQVLQMPNIRQSPGSLLQPPLQDGVQDQKAAVLPPHPGQTPLTQNKMQLGTMPRVQEGQGSAVPQNPLVNNQPSALPFQQVPLQPRIQLPQQGQSQFLQPTTMPGLSGVSTVPSIRPFTGFSTRPQTPALETSTALKQQVQPPLLENPRSVVAASLGHNSQLVLPNATPQHSLLPRPLLSQLSFQPNSSNSMILPGVPETVNKHAERSAQVTDDATRVPRSNNYSNLPLGLSEQASMVGDTSEPMIHPSKMARLEDGRSALRTMMSQNTFTMSGSGATQGFGAGSLTANRIPSAEGLQHSEKQAPQLQLPPEVESALLQQVMSLTSEQLSSLPPEQRQQVIQLQQMFR* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01606 573 Gene3D - 535 573 IPR038192 -
Eupl13g01606 573 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Eupl13g01606 573 FunFam Cleavage stimulating factor 64 157 232 - -
Eupl13g01606 573 CDD RRM_CSTF2_RNA15_like 8 84 - -
Eupl13g01606 573 Pfam Hinge domain of cleavage stimulation factor subunit 2 167 230 IPR025742 -
Eupl13g01606 573 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 4 573 - -
Eupl13g01606 573 MobiDBLite consensus disorder prediction 439 453 - -
Eupl13g01606 573 SUPERFAMILY RNA-binding domain, RBD 5 103 IPR035979 GO:0003676
Eupl13g01606 573 Gene3D - 1 111 IPR012677 -
Eupl13g01606 573 Gene3D - 159 231 - -
Eupl13g01606 573 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Eupl13g01606 573 FunFam Cleavage stimulating factor 64 1 117 - -
Eupl13g01606 573 SMART rrm1_1 9 82 IPR000504 GO:0003723
Eupl13g01606 573 MobiDBLite consensus disorder prediction 83 111 - -
Eupl13g01606 573 Pfam Transcription termination and cleavage factor C-terminal 541 570 IPR026896 GO:0031124
Eupl13g01606 573 MobiDBLite consensus disorder prediction 434 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01606 Eupl-Chr13 33984664 34001130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01606 10 176 Eukaryotic Initiation Factors Gene Family AT1G49760 27.586 2.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01606 K14407 - ming:122073942 760.37