Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl13g01595 | ATGCAAATCAAGCAAGTCATGGAGGAGTTTAATTCGAAGATAACGGGGAGCAGCACTGCTTCTCCGATCGATCTACAGAGGGAAACCCAATTAACACTCAGCAGATCTCGATATCCCTTTGCGAGCCCCGCATTCGGTTCCCCAACGTCTGATCCTCTCGATATGGATCCCACACTGATCCGGAACTCTCGGGCCTCAGCCGCAGCTGGGCTTGTTCCATCTTCTGTCGATGTGTTCGGATCTCCGGCCATTGATTCTGGCAAGTTCCACCAACTGCTTCTCCACCACCGCCACCAGCACACCAAATTGTCTTTCTCTCGCGGCTCTTCGTCATCTCCTCTGTCGGCGATTGAAAACCTCATGACGCCTCCTTCGAGGTCGCCCCCTATGTTTTCTACGCCGGTGAAGGTTGAAGAAGACGTACTAGTGATGGACGGGATTCTGGTCGGATCATTACAGGGAGCTCGTTCGAGGTCGGCGTCAGATTCCGGCTCGTTGTCGGGGAACAGCCTGTATAAGACAGACATTTGTCGATCGTGGGAGGACTTCGGTAGCTGCCGATACGGCTCCAAGTGCCAGTTCGCTCACGGAAAGGAGGATATGCGACCTACTCGGAACTCAAACAAGAACAAGTCGGAGGCGCAGGTGTGTAAGAGTTTTAGTACTACAGCGGGATCATGCACATACGGCACAAAATGCCGTTTCATTCACCATGGTGCAGCAGCAGCCGAAACAAACCCAACAATCATGGCAGAACAAGAGAGCAGCACTGTCGATTGGTCGCCGGCAGACGACAACATTGAGGTTCGGTTACCTACCTTATCGACTGAAGAATCACCGGCCAGGGAAGTTGTTAATGCTTACATCAATGACGTTCTCTACGGTCCTCGTCGAACACGGAGATTGCCAGTTTTCTCCGAATTTTGCCCAGAGTAA | 936 | 0.5214 | MQIKQVMEEFNSKITGSSTASPIDLQRETQLTLSRSRYPFASPAFGSPTSDPLDMDPTLIRNSRASAAAGLVPSSVDVFGSPAIDSGKFHQLLLHHRHQHTKLSFSRGSSSSPLSAIENLMTPPSRSPPMFSTPVKVEEDVLVMDGILVGSLQGARSRSASDSGSLSGNSLYKTDICRSWEDFGSCRYGSKCQFAHGKEDMRPTRNSNKNKSEAQVCKSFSTTAGSCTYGTKCRFIHHGAAAAETNPTIMAEQESSTVDWSPADDNIEVRLPTLSTEESPAREVVNAYINDVLYGPRRTRRLPVFSEFCPE* | 312 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl13g01595 | 311 | ProSiteProfiles | Zinc finger C3H1-type profile. | 211 | 241 | IPR000571 | GO:0046872 | |
Eupl13g01595 | 311 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 172 | 198 | IPR000571 | GO:0046872 | |
Eupl13g01595 | 311 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 216 | 237 | IPR000571 | GO:0046872 | |
Eupl13g01595 | 311 | Gene3D | - | 202 | 243 | - | - | |
Eupl13g01595 | 311 | SUPERFAMILY | CCCH zinc finger | 170 | 202 | IPR036855 | GO:0046872 | |
Eupl13g01595 | 311 | FunFam | zinc finger CCCH domain-containing protein 15-like | 166 | 204 | - | - | |
Eupl13g01595 | 311 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 115 | 244 | IPR045877 | GO:0003729 | |
Eupl13g01595 | 311 | SMART | c3hfinal6 | 211 | 239 | IPR000571 | GO:0046872 | |
Eupl13g01595 | 311 | SMART | c3hfinal6 | 171 | 198 | IPR000571 | GO:0046872 | |
Eupl13g01595 | 311 | Gene3D | - | 165 | 201 | - | - | |
Eupl13g01595 | 311 | ProSiteProfiles | Zinc finger C3H1-type profile. | 171 | 199 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl13g01595 | Eupl-Chr13 | 33795520 | 33803362 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl13g01595 | 171 | 237 | C3H Transcription Factor Family | AT1G68200 | 38.806 | 3.31e-11 | 61.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Eupl13g01595 | zf-CCCH | 1.3e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl13g01595 | K18753 | K15308 | nnu:104599994 | 328.946 |