Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01595 ATGCAAATCAAGCAAGTCATGGAGGAGTTTAATTCGAAGATAACGGGGAGCAGCACTGCTTCTCCGATCGATCTACAGAGGGAAACCCAATTAACACTCAGCAGATCTCGATATCCCTTTGCGAGCCCCGCATTCGGTTCCCCAACGTCTGATCCTCTCGATATGGATCCCACACTGATCCGGAACTCTCGGGCCTCAGCCGCAGCTGGGCTTGTTCCATCTTCTGTCGATGTGTTCGGATCTCCGGCCATTGATTCTGGCAAGTTCCACCAACTGCTTCTCCACCACCGCCACCAGCACACCAAATTGTCTTTCTCTCGCGGCTCTTCGTCATCTCCTCTGTCGGCGATTGAAAACCTCATGACGCCTCCTTCGAGGTCGCCCCCTATGTTTTCTACGCCGGTGAAGGTTGAAGAAGACGTACTAGTGATGGACGGGATTCTGGTCGGATCATTACAGGGAGCTCGTTCGAGGTCGGCGTCAGATTCCGGCTCGTTGTCGGGGAACAGCCTGTATAAGACAGACATTTGTCGATCGTGGGAGGACTTCGGTAGCTGCCGATACGGCTCCAAGTGCCAGTTCGCTCACGGAAAGGAGGATATGCGACCTACTCGGAACTCAAACAAGAACAAGTCGGAGGCGCAGGTGTGTAAGAGTTTTAGTACTACAGCGGGATCATGCACATACGGCACAAAATGCCGTTTCATTCACCATGGTGCAGCAGCAGCCGAAACAAACCCAACAATCATGGCAGAACAAGAGAGCAGCACTGTCGATTGGTCGCCGGCAGACGACAACATTGAGGTTCGGTTACCTACCTTATCGACTGAAGAATCACCGGCCAGGGAAGTTGTTAATGCTTACATCAATGACGTTCTCTACGGTCCTCGTCGAACACGGAGATTGCCAGTTTTCTCCGAATTTTGCCCAGAGTAA 936 0.5214 MQIKQVMEEFNSKITGSSTASPIDLQRETQLTLSRSRYPFASPAFGSPTSDPLDMDPTLIRNSRASAAAGLVPSSVDVFGSPAIDSGKFHQLLLHHRHQHTKLSFSRGSSSSPLSAIENLMTPPSRSPPMFSTPVKVEEDVLVMDGILVGSLQGARSRSASDSGSLSGNSLYKTDICRSWEDFGSCRYGSKCQFAHGKEDMRPTRNSNKNKSEAQVCKSFSTTAGSCTYGTKCRFIHHGAAAAETNPTIMAEQESSTVDWSPADDNIEVRLPTLSTEESPAREVVNAYINDVLYGPRRTRRLPVFSEFCPE* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01595 311 ProSiteProfiles Zinc finger C3H1-type profile. 211 241 IPR000571 GO:0046872
Eupl13g01595 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 198 IPR000571 GO:0046872
Eupl13g01595 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 237 IPR000571 GO:0046872
Eupl13g01595 311 Gene3D - 202 243 - -
Eupl13g01595 311 SUPERFAMILY CCCH zinc finger 170 202 IPR036855 GO:0046872
Eupl13g01595 311 FunFam zinc finger CCCH domain-containing protein 15-like 166 204 - -
Eupl13g01595 311 PANTHER CCCH ZINC FINGER/TIS11-RELATED 115 244 IPR045877 GO:0003729
Eupl13g01595 311 SMART c3hfinal6 211 239 IPR000571 GO:0046872
Eupl13g01595 311 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Eupl13g01595 311 Gene3D - 165 201 - -
Eupl13g01595 311 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01595 Eupl-Chr13 33795520 33803362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01595 171 237 C3H Transcription Factor Family AT1G68200 38.806 3.31e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl13g01595 zf-CCCH 1.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01595 K18753 K15308 nnu:104599994 328.946