Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01573 ATGGCGAGTGCTCCTCAATCTCCCGCGATGGCTCAGCAGCAACAACAGCAACAGCAGCAAGTACAAACGCCAGGAGCGTTCAGCAACGCTTCTCTGTACGTTGGAGATCTGGATCCGTCGATTACCGAAGGCCAACTGTATGATCTCTTCAGCCAAGTCGCTCCAGTCGCTTCGATCAGGGTTTGTAGGGATCAGATCAGGAGGGTCTCTCTTGGTTACGCTTATGTTAATTTCAACAACGCTCAGGATGCTAATAATGCATTGGAGCTTTTGAATTTTACACCCATCAATGGGAAACCTGTCAGGATTATGTACTCACATCGAGATCCTAGTATTCGAAAAAGTGGATTTGCTAATGTATTTATCAAGAATTTGGACACGTCGATAGATAACAAGGCGTTGCATGATACTTTTGCCGCCTTTGGTACTGTCCTTTCTTGCAAGGTGGCCATTGATAACAGCGGCCAGTCGAAGGGATATGGGTTTGTACAATTTGAACAGGAGGAAGCTGCACAGAATGCCATTAGGCGGCTTAATGGGATGTTGATAAATGATAAACAGGTGTATGTCGGCCTTTTTGTTCGTAGACAAGAAAGAGATCCAGCAAATGGATCGCCAAAGTTCACTAATGTGTATGTAAAAAATTTGTCTGAAACAACTACTGATGAGGAACTTGAGAAAGTTTTTGGCAGTTATGGTCCCATCACTAGTGCAGTTATTATGAGGGATGCAAATGGAAACTCCAGAGGTTTTGGTTTTGTTAATTTTCAGAACCCAGATGATGCTGCTTCTGCAGTTGAGAAACTGAATGGAGTAACTTTAAACGATGACAAGGTATGGTATGTTGGGAAGGCTCAGAGAAAAGCCGAAAGAGAGGCCGAGTTGAAGGCCAAATATGAACAGGAAAGAAATGGTAGACTGGAAAAACTACAAGGGGCAAATTTATATCTTAAAAATCTTGATGATAGCATCAATGATGAAAAACTGAAGGACTTGTTTTCTGAATTTGGCAGTATAACATCCTGCAAGGTTATGCTCGATCCACAAGGGCAGAGCAGGGGTTCTGGTTTTGTTGCATTTTCTACTCCTGAGGAAGCTACTAGAGCTGTAAATGAAATGAATGGGAAGATGATTGGACGGAAACCTCTGTATGTCGCAGTGGCCCAACGCAAGGAAGAAAGGAAGGCGAGACTGCAGGCACAATTTTCTCAAATTCGAGGACCTGGTGGGATGGCACCTATGCCCTCGGGTATGCCTGCTTTCCACCCTGGGGGACCTAGGCTTGCCCCTCAGCAGATGTATTTTGGTCAAGGCTCTCCCGGTCTGATTCCACCTCAGCCTGCAGGGTATGGCTTCCAGCAACAACTCCTGCCAGGAATGCGGCCAGGTGTTGCTCCAAACTTTATAATGCCACCATACCACCTCCAGAGGCAAGGACAACCTGGACAGCGGATGGGTGTAAGGAGAGGTGGAACCCCACAACAGATGCAGCAGCAGCAGGTGATACAGCGTAACGCTAATCAAGGCTTCAGATTCATATCTAATCCACGGAATGGGTTGGACCCGTCAATGGTACCTCAGGGTCTCATGGGTCCGATGATGCCATTGCCACTTGATGGTTCTGGGATGCCTATTGCTCCAATGGATGCCCAGCGACCTGGGCCAGTGCCGATTACAACGCTTGCCTCTGCTTTAGCTTCTGCAAGCCCTGAGCATCAGCGTCAGATGTTGGGAGAACAGCTATTTCCGCTTGTCGAACGTCTCGAGCATGAATTTGCAGGAAAAGTCACTGGGATGCTTCTGGAGATGGACCAAACAGAAGTTCTTCATCTCATAGAATCCCCAGATGCTCTGAAGAAGAAAGTGGGTGAAGCCATGGATGTTCTCCGGTTAGCTTCCTCAGGATCCGATGCTGCAGATCAACTCGGTTCAATGTCGCTGAACGACTGA 1950 0.4703 MASAPQSPAMAQQQQQQQQQVQTPGAFSNASLYVGDLDPSITEGQLYDLFSQVAPVASIRVCRDQIRRVSLGYAYVNFNNAQDANNALELLNFTPINGKPVRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAIDNSGQSKGYGFVQFEQEEAAQNAIRRLNGMLINDKQVYVGLFVRRQERDPANGSPKFTNVYVKNLSETTTDEELEKVFGSYGPITSAVIMRDANGNSRGFGFVNFQNPDDAASAVEKLNGVTLNDDKVWYVGKAQRKAEREAELKAKYEQERNGRLEKLQGANLYLKNLDDSINDEKLKDLFSEFGSITSCKVMLDPQGQSRGSGFVAFSTPEEATRAVNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFSQIRGPGGMAPMPSGMPAFHPGGPRLAPQQMYFGQGSPGLIPPQPAGYGFQQQLLPGMRPGVAPNFIMPPYHLQRQGQPGQRMGVRRGGTPQQMQQQQVIQRNANQGFRFISNPRNGLDPSMVPQGLMGPMMPLPLDGSGMPIAPMDAQRPGPVPITTLASALASASPEHQRQMLGEQLFPLVERLEHEFAGKVTGMLLEMDQTEVLHLIESPDALKKKVGEAMDVLRLASSGSDAADQLGSMSLND* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01573 649 Coils Coil 282 302 - -
Eupl13g01573 649 CDD RRM3_I_PABPs 208 288 - -
Eupl13g01573 649 FunFam Polyadenylate-binding protein 7 113 - -
Eupl13g01573 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 278 IPR000504 GO:0003723
Eupl13g01573 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Eupl13g01573 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Eupl13g01573 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Eupl13g01573 649 CDD RRM1_I_PABPs 31 110 IPR034364 -
Eupl13g01573 649 CDD RRM4_I_PABPs 312 390 - -
Eupl13g01573 649 Pfam Poly-adenylate binding protein, unique domain 565 629 IPR002004 GO:0003723
Eupl13g01573 649 FunFam Polyadenylate-binding protein 296 401 - -
Eupl13g01573 649 FunFam Polyadenylate-binding protein 553 634 - -
Eupl13g01573 649 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Eupl13g01573 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Eupl13g01573 649 PANTHER RNA BINDING PROTEIN 12 91 - -
Eupl13g01573 649 SUPERFAMILY PABC (PABP) domain 515 638 IPR036053 GO:0003723
Eupl13g01573 649 Gene3D - 2 116 IPR012677 -
Eupl13g01573 649 SMART poly_2 569 632 IPR002004 GO:0003723
Eupl13g01573 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Eupl13g01573 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Eupl13g01573 649 Gene3D - 117 192 IPR012677 -
Eupl13g01573 649 MobiDBLite consensus disorder prediction 1 22 - -
Eupl13g01573 649 FunFam Polyadenylate-binding protein 199 295 - -
Eupl13g01573 649 Gene3D - 310 408 IPR012677 -
Eupl13g01573 649 CDD RRM2_I_PABPs 116 191 IPR045305 -
Eupl13g01573 649 Gene3D - 553 633 - -
Eupl13g01573 649 SMART rrm1_1 314 386 IPR000504 GO:0003723
Eupl13g01573 649 SMART rrm1_1 210 283 IPR000504 GO:0003723
Eupl13g01573 649 SMART rrm1_1 31 104 IPR000504 GO:0003723
Eupl13g01573 649 SMART rrm1_1 119 191 IPR000504 GO:0003723
Eupl13g01573 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Eupl13g01573 649 Gene3D - 202 309 IPR012677 -
Eupl13g01573 649 SMART rrm2_1 210 282 IPR003954 GO:0003676
Eupl13g01573 649 SMART rrm2_1 119 191 IPR003954 GO:0003676
Eupl13g01573 649 SMART rrm2_1 314 386 IPR003954 GO:0003676
Eupl13g01573 649 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 30 630 IPR006515 GO:0003723
Eupl13g01573 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 557 634 IPR002004 GO:0003723
Eupl13g01573 649 FunFam Polyadenylate-binding protein 119 192 - -
Eupl13g01573 649 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01573 Eupl-Chr13 33278926 33286793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01573 29 630 Eukaryotic Initiation Factors Gene Family AT1G71770 61.438 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01573 K13126 - ming:122063178 1061.21