Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01571 ATGGGTGGGACTGGAAGAACACTCCTCAGCCTCTCATTCTCCTCAAATCTCTTCTCTCACTCTCTCTTCTCTGCAACAACAAGACACCCATTTGCCAAAACATCATCATCTAGGGTTTTTCTAGGGTTTAGGCCTCTATGCTCCTCTACTACTACCACCACCACCACAACCACAGTTGAACCAGACCAGGGGTTGGAACCCATGAGGCACTCTATCCTCCTGGAAAGGTTGAGAATCAGACACCTCAAAGAATCTGCAAAGACCCCGCAAAGCAGAACACCATCTGTTCGTGCTGTTGAGAAGGAGCAGGAGGAGAAATCTTTGAAGAAAAGCAAACCCACAAAGGTCTTTTCGAGTTTTGGGGAGTTGGGTTTGATTGAGGAGGTGATGGGTGCTGTTGAGGAGCTTGGTATATCGGTTCCGACTGAGATTCAGTGTCTCGGTATCCCGGCTGTACTCGAAGGGACGAGTGTGGTGTTGGGTTCTCATACTGGGTCAGGGAAGACTTTGGCTTATATGTTGCCTTTGGTTCAGTTAATGAGACGGGACGAAGAATTATTTGGCATGCTAATGAAACCCAGGCGGCCTCGAGCTGTTGTGCTATGCCCCACAAGGGAGCTCTCCGAGCAGGTGTTTCGTGTGGCAAAATCTATAAGTCATCATGCACGATTCAGGTGTACCATGGTGAGTGGTGGAGGTCGTTTAAGACCCCAGGAAGATTCATTGAATGTCCCGATTGACATGGTTGTTGGGACTCCTGGGAGGGTTCTTCAACATATTGAAGCCGGGAACATGGTTTATGGTGACATCAAATACTTGGTGCTGGATGAGGCGGACACCATGTTTGATCGTGGCTTTGGTCCCGATATTCGCAAGTTTCTTAGCCCGTTGAAAAATCGTGCACTGAAATCGGATGAACAAGGATTTCAAACCATTTTGGTCACTGCAACAATGACAAAGGCAGTGCAAATGTTGATTGATGAGGAATTTCAAGGAATAATCCATTTACGCACATCGACGTTGCACAAGAAGATTGCATCTGCTCGACATGATTTTATCAAACTCTCTGGTGCTGAAAACAAGCTGGAGGCATTGCTACAGGTTCTTGAGCCAAGTCTGTCAAAGGGAAACCGGGTGATGGTGTTCTGCAACACCTTGAATTCTAGTCGTGCTGTGGATCATTTTCTGGGTGAAAATCAAATTTTCACAGTTAATTACCATGGGGAGGTGCCGGCTGAACAAAGGGTTGAAAACCTTAAGAAATTTAAGAGCGAAGATGGAGATTGCCCCACATTGGTCTGCACAGACTTAGCTGCTCGAGGACTGGACTTGGATGTGGATCACGTAATCATGTTTGATTTTCCCATGAACTCTATTGACTACCTCCATCGCACTGGAAGAACTGCTCGTATGGGAGCGAAAGGCAAAGTGACAAGTCTGGTGGCAAAGAAAGACCAAATTTTGGCCAGCCGAATCGAGGAGGCCATCAGGAAGAACGAGAGCTTGGAAACTCTCACTGCAGATAACGTCAGAAGGGACATTGCCAAGGGCCAAAATTAA 1560 0.4699 MGGTGRTLLSLSFSSNLFSHSLFSATTRHPFAKTSSSRVFLGFRPLCSSTTTTTTTTTVEPDQGLEPMRHSILLERLRIRHLKESAKTPQSRTPSVRAVEKEQEEKSLKKSKPTKVFSSFGELGLIEEVMGAVEELGISVPTEIQCLGIPAVLEGTSVVLGSHTGSGKTLAYMLPLVQLMRRDEELFGMLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNVPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLSPLKNRALKSDEQGFQTILVTATMTKAVQMLIDEEFQGIIHLRTSTLHKKIASARHDFIKLSGAENKLEALLQVLEPSLSKGNRVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVENLKKFKSEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPMNSIDYLHRTGRTARMGAKGKVTSLVAKKDQILASRIEEAIRKNESLETLTADNVRRDIAKGQN* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01571 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 483 IPR027417 -
Eupl13g01571 519 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 52 512 - -
Eupl13g01571 519 SMART ultradead3 137 356 IPR014001 -
Eupl13g01571 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 336 IPR014001 -
Eupl13g01571 519 SMART helicmild6 390 472 IPR001650 -
Eupl13g01571 519 CDD SF2_C_DEAD 349 481 - -
Eupl13g01571 519 MobiDBLite consensus disorder prediction 83 110 - -
Eupl13g01571 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 511 IPR001650 -
Eupl13g01571 519 Pfam DEAD/DEAH box helicase 142 324 IPR011545 GO:0003676|GO:0005524
Eupl13g01571 519 Gene3D - 80 336 IPR027417 -
Eupl13g01571 519 Pfam Helicase conserved C-terminal domain 361 472 IPR001650 -
Eupl13g01571 519 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 118 146 IPR014014 GO:0003724
Eupl13g01571 519 CDD DEADc 129 328 - -
Eupl13g01571 519 Gene3D - 347 514 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01571 Eupl-Chr13 33244431 33254835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01571 117 494 Eukaryotic Initiation Factors Gene Family AT3G19760 29.275 5.12e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01571 - - vvi:100247785 833.558