Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01526 ATGTGCATGTTAAAGGTGGCGAACTCACAAGGCAGGGACGATTACGTCCACTTTCCGACGAGGATTGACGAAATTTACACCGATGAAGGACCGTCGCAAACACCGCCACCAACACAGCTACAACAGTTACAAGCAGGGGTTGTAACGGCGTCGGCCGCACCGATGTTTCCGGGTTATAGTAGAGCGAGAGAGATGTCGGCGATGGTATCGGCTTTGACCCATGTGGTGTCTGGTGAGAGGAATGAAGATTTTGTTTATGGGGCTGCGGATTTGAATTGTTCTGTTGCATCAACTATAGCTTCTGTTTCTTCGCCGTCGTCTTCGTATTCTTCTTCTTCTTGGGGTGGTGGACAGAAGAGAGGACGTGAAGAAGAGGGTGGTGGTCAGTTAACTGAATCGATGTTGAAGATTTACAGAGGATATGGTGATTTCAAAACTTCACAGGGAGAGTCATCATCAGGAGTCAAAGAAGAAGTAATTACAACTACCGCAACCACTATTCCATCTACTCCCAAAGATGAGATTACTTCCTATGGAGGAGGAGGAGAGGAGAGGAGGAGAAAATACAGAGGAGTGAGACAAAGGCCATGGGGCAAATGGGCAGCTGAAATAAGGGATCCACACAAAGCTGCTAGAGTTTGGTTAGGCACATTTGAAACAGCTGAAGCAGCTGCAAGAGCTTATGATGAAGCTGCTCTGCGATTCAGAGGAAACAAAGCAAAACTCAACTTCCCGGAAAACGTTAGGCTCCGTCCATCAATTCCTGTTTCTCCGGCGACCCAGTTGACATATTCTGATTCTCCGGCAACCCTTTTGCCGGTTTCTCAAACTCCTTCGCCATTCTTGCAATCTCAAGCTCTTCAACAGCGGCAACAGAGCACTGATATTACGAGGGATATCGTTGAGTATTCTCAGTTGCTTCAGAATTCTGGTGATTTTCAAAGGCAGCCGACAAGTCTCTTAGAGCAGATGTTCTATTCTTCATCTTTGGCTTCTTCTTTCCAATCTTCTTCTTCTCCTTCATCTTCTCCTTCCATTCCTCTGTTTTTCACGGATCAGCAAATGGGTTATTTTGGACAGCCGGATCAGAAGGATGGATCTTGGACGGGTTCGGGTCGTTATCCGTCTACTTCTGGTTGA 1140 0.4675 MCMLKVANSQGRDDYVHFPTRIDEIYTDEGPSQTPPPTQLQQLQAGVVTASAAPMFPGYSRAREMSAMVSALTHVVSGERNEDFVYGAADLNCSVASTIASVSSPSSSYSSSSWGGGQKRGREEEGGGQLTESMLKIYRGYGDFKTSQGESSSGVKEEVITTTATTIPSTPKDEITSYGGGGEERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVRLRPSIPVSPATQLTYSDSPATLLPVSQTPSPFLQSQALQQRQQSTDITRDIVEYSQLLQNSGDFQRQPTSLLEQMFYSSSLASSFQSSSSPSSSPSIPLFFTDQQMGYFGQPDQKDGSWTGSGRYPSTSG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01526 379 ProSiteProfiles AP2/ERF domain profile. 188 245 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 MobiDBLite consensus disorder prediction 334 379 - -
Eupl13g01526 379 MobiDBLite consensus disorder prediction 102 129 - -
Eupl13g01526 379 SUPERFAMILY DNA-binding domain 188 246 IPR016177 GO:0003677
Eupl13g01526 379 Pfam AP2 domain 188 237 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 Gene3D AP2/ERF domain 187 247 IPR036955 GO:0003700|GO:0006355
Eupl13g01526 379 SMART rav1_2 188 251 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 PRINTS Ethylene responsive element binding protein signature 211 227 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 MobiDBLite consensus disorder prediction 168 190 - -
Eupl13g01526 379 MobiDBLite consensus disorder prediction 102 117 - -
Eupl13g01526 379 FunFam Ethylene-responsive transcription factor 2 187 246 - -
Eupl13g01526 379 CDD AP2 188 247 IPR001471 GO:0003700|GO:0006355
Eupl13g01526 379 PANTHER DNA-BINDING DOMAIN 153 310 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01526 Eupl-Chr13 32298873 32301767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01526 1 289 AP2-EREBP Transcription Factor Family AT5G64750 41.009 1.22e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Eupl13g01526 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01526 - - ming:122074879 338.961