Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01507 ATGAGGAAGCTCAAGTTCCATGAGAAGAAGCTTCTGAAGAAGGTGAATTTTCTGGAATGGAAGAGAGAAGGCGGACACAGAGAAGCCAATGTCATGCGTCGTTACCATGTCACTGGTCGTGACGATTACAAAAAATATTCGGGCTTATGTCGGATGGTGCAGAAGCTCGTTAACATTTTGAAGCAGATGGATCCAAGAGACCCTTTTCGGATTGAAATGACTGATATGCTCTTAGAAAAGCTGTATAACATTGGTGTCATCCCCACCAGAAAGAGCTTGGCTTTGTGCGATCGCTTGTCTGTGTCTTCCTTTTGCAGGCGCAGACTGTCAACAGTTCTGGTGAGGTTGAAGTTTGCAGAGCACCTGAGAGAAGCTGTCACGTATATCGAGCAGGGGCATATTCGAGTGGGCCCGGAGACAGTTACAGATCCTGCCTTCCTCGTGACAAGGAATATGGAAGACTTCGTTACATGGGTAGATTCATCCAAGATAAAGAGGAAGGTGTTGGAGTACAATGAGAGGTTGGATGATTATGATGCAATAAACTGA 549 0.4554 MRKLKFHEKKLLKKVNFLEWKREGGHREANVMRRYHVTGRDDYKKYSGLCRMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNIGVIPTRKSLALCDRLSVSSFCRRRLSTVLVRLKFAEHLREAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFVTWVDSSKIKRKVLEYNERLDDYDAIN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01507 182 Gene3D - 107 181 IPR036986 GO:0003723
Eupl13g01507 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Eupl13g01507 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Eupl13g01507 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Eupl13g01507 182 SMART s4_6 107 170 IPR002942 GO:0003723
Eupl13g01507 182 CDD S4 107 170 - -
Eupl13g01507 182 SUPERFAMILY Alpha-L RNA-binding motif 26 175 - -
Eupl13g01507 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 91 IPR001912 GO:0019843
Eupl13g01507 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Eupl13g01507 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 179 IPR022801 GO:0003735|GO:0015935|GO:0019843
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01507 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 33.333 1.88e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01507 K14560 - vvi:100261745 352.443