Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01502 ATGGGTCGTGCGAAGCTCAATATGGAGCTTATTAGCAAGGAGAAATCACGGAATACAACGTTCTTCAAGAGAAAAAAGGGTTTGAAGAAGAAGATTTATGAGTTCAGTACTCTCTGCGATGTCGATGCCTGCTTAATCATCTTGGGACCAAACCAGGGTGAACGTCCGGCCGAACCAGAAATATGGCCGGAGAACCCCGATGAATGTAAGCGCGTCATCGACAAGTATAAAGAACTCAGCGACGATGAAAGAGGAAAGCGAAACCAAGGTCTCAAAAACTTCTTCGAGGACAGGAAGAAAAAGATGAAGGAGGAGATTGCTAAATTGCGCTTGGGCCAGCAGGGTAACACTGAGACAAAGTTTCCTACTTGGGACGATCGTTTAGAGAGTTTTACAGAAGAGGAATTACGGGATCTTCTCGCTTCCTTGGACTCCAAACTTCAACTTGTGAAGAGGAAAGTCGATCTGATGAATGGGAAGCAAAGCATCTTGGATAGAGTACCAGGGGTATTAAACTACACCTACCCAGTGGATCAAAACCCATCATCTTCATCATGTGTGCACCAGCAGGGACAGAGCATGGCGATGAATGGTATGCACCCTCAACAACACTCGTGGGTCAAACCACTGGATTATTACTCTTTCGATCCGATGATGAATCCTACGATGAACGGTCCAGGGATGTTAACTTACAGCTATCCAGTACCTGATCAAAACCCAGCTTCTTACGTATCATCATCGTCGGATGTGCATCAGGGGAGCAACATGGGAATGGATGCCATGCACCATCAGCCAATCTCTTGGGTCAAACCGCTGGATTATTACCCATCTGATCCAATGCCGATTGTTAACGAGAGTCCGATGATGATGAGGATGAACGGTTATGATTATGGTTATTATTATTGA 906 0.4536 MGRAKLNMELISKEKSRNTTFFKRKKGLKKKIYEFSTLCDVDACLIILGPNQGERPAEPEIWPENPDECKRVIDKYKELSDDERGKRNQGLKNFFEDRKKKMKEEIAKLRLGQQGNTETKFPTWDDRLESFTEEELRDLLASLDSKLQLVKRKVDLMNGKQSILDRVPGVLNYTYPVDQNPSSSSCVHQQGQSMAMNGMHPQQHSWVKPLDYYSFDPMMNPTMNGPGMLTYSYPVPDQNPASYVSSSSDVHQGSNMGMDAMHHQPISWVKPLDYYPSDPMPIVNESPMMMRMNGYDYGYYY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01502 301 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Eupl13g01502 301 Coils Coil 133 153 - -
Eupl13g01502 301 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Eupl13g01502 301 Coils Coil 92 112 - -
Eupl13g01502 301 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Eupl13g01502 301 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01502 Eupl-Chr13 31714222 31715759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01502 1 148 Type I MADS-box Gene Family AT5G55690 34.000 2.62e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl13g01502 SRF-TF 4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01502 - - ming:122072881 204.527