Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01434 ATGGCAGATCTTGTTAGCTACGGGAATGCCGAGCAGGCATTAATTGCGCTGAAGAAAGGTGCTCAACTGCTCAAGTATGGCCGCAAAGGGAAGCCCAAGTTTTGCCCATTCAAACTTTCTAATGATGAATCATCTTTGATCTGGTTGTCAAGTGGTGGAGAAAGAAAATTGAAGTTAGCTTCTGTCTCAAAAATTATCCCTGGACAAAGAACATCTGTTTTCCAACGATACTTGCGCCCTGAGAAGGACTACTTGTCTTTTTCTCTTATATACAACAACGGAAAGCGCTCCCTTGATCTGATATGCAAGGACAAAGTTGAGGCAGAGGTGTGGATTGCAGGCCTCAAGACATTGATATCTTCGGGTCAATGTGGGCGTTCAAAAATTGATGGATGGAGTGATGGAGGACTGTACTTTGATGACAGTAGAGACTTGACGTCAAATAGCCCAAGTGACAGTTCTGCCAGTGCCACACGAGATATTAGCTCTCCGGAAACTTCTACCAGTCTCAACGCAAGTCCTTTGCCCAAAAGTTGTCCTCCTGAGAGTTCAGTGAGTTCAGAAAGGTCACATGTGGCAGTAGAACACACAAATATGCAAGTAAAAGGATCCGCTTCAGATGCTTTTCGCGTCAGTGTTTCAAGTGCCCCCAGCACATCTAGTCATGGTTCTGCACAGGATGATTATGATGCTTTAGGTGATGTATACATATGGGGTGAGGTTACCTGTGATAATCTTGTCAGGGTTGGGGCTGATAAAAATGTTAATCCTTTGAGCTCAAGAGCTGATGTACTTCTGCCTAAGCCATTAGAGTCCAATGTAGTTTTGGATGTTCATCATATAGCCTGTGGGGTCAAGCATGCTGCACTAGTCACGAGACAAGGAGAAGTTTTCACTTGGGGTGAAGAATCTGGAGGACGGCTTGGTCATGGTACTGGGAGAGATGCTATTCAACCTCGTCTTGTTGAATCTTTAGCAGTCTCTAATGTTGATTTCGTTTCGTGTGGAGAGTTTCATACTTGTGCTGTTACTATGGCTGGTGAACTTTATACATGGGGAGATGGAACACATAATGCTGGCCTTCTCGGTCATGGTACTGACGTGAGTCACTGGATACCCAAGAGAGTATCAGGTCCTTTAGAGGGACTTCAAGTTGCTTCAGTTACTTGTGGTCCATGGCATACGGCCTTGCTAACTTCAACAGGGCAATTGTTTACATTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGCAACAGAGAAAGTGTTGCGTTTCCAAGAGAAGTAGAATCACTGATCGGGTTGAAGACAATTGCGGTTGCATGTGGAGTGTGGCACACAGCTGCTGTCGTGGAGGTGATCATGACACAATCTAGTGCTAGTTTTTCGTCGGGAAAACTGTTTACTTGGGGCGATGGCGACAAGAATCGTCTTGGGCATGGAGACAAGGAACCAAGACTGAAGCCCACCTGTGTGCCCTCACTTATTGATTATAATTTTCACAAGATTGCTTGTGGGCATAGTCTAACAATTGGCTTGACCACATCAGGACACGTTTTTACCATGGGAAGTACTGTTTATGGTCAGCTTGGCAATCCTCATTCTGATGGAAAGCTACCTTGCTTGGCAGAAGATAATCTTGTGGGTGAATCTGTTGAAGACATAGCCTGTGGTGCGTACCATGTGGCAGTGCTAACATCTAAGAATGAGGTTTACACATGGGGAAAGGGTGCTAATGGGAGATTGGGCCACGGGGACATCGAAGACAGAAAAGCACCAACATTGGTAGAAGCTTTGAAGGATAGACACGTAAAATTTATTGCATGTGGCTCAAACTTCACAGCAGCTATATGTCTTCACAAATGGGTATCTGGAGCAGAGCAGTCTCAGTGCTCAGCATGTAGACAGGCGTTTGGGTTTACTAGAAAGAGGCACAATTGCTATAATTGTGGACTTGTACACTGCCATTCATGCAGTTCCAGAAAAGCTTTAAGAGCGGCATTGTCTCCTAATCCTGGCAAGCCATATCGCGTGTGTGATTCCTGTCATACGAAACTAAACAAGGTGTCAGAAGCCAGTAATAATAATAATAGGAGGAATGTCATACCCCGAATATCGGGTGAAAACAAAGACAGATTAGACAAGGCTGAGATAAGATTATCTAAGTCCACAGTGCCTACCAATATGGATTTGATTAAGCAGCTAGATAGTAAGGCGGCCAAACAAGGAAAGAAAGCCGATAACTTCTCTCTTATCCGGTCTTCCCAAGCGCCCTCTTTGTTACAACTGAAAGATATCCCTTTCTCTAGTGCAGTTGAAACGCGTCTAACAGTTCCCAAAGCAGTTCTTACATCGGTAGGTCAGTCAGGAGTCAGTTCTAGGGCTGTTTCTCCTTTCTCGAGGAAACCTAGCCCACCGCGTTCTGCAACACCTATTCCTACAACATCAGGCCTTTCTTTTTCCAAAAGTATCACAGATAGTCTGAAGAAAACTAATGAACTCTTGAATCAAGAAGTGCAGAAGTTACGTGCCCAGGTTGACAGCCTGAGCAAACGGTGTGAACTTCAAGAATTTGAGCTGCAGAAATCATCAAAGAAAACTCAAGAAGCTATGGCATTGGCCACAGAGGAATCTGCCAGGTCTAAAGCTGCAAAAGAAGTTATAAAATCTTTAACTGCGCAGCTCAAAGATATGGCTGAGAGGCTCCCACCTGGGGTCTATGAGAGTGACAGCATGAAGCCAGTCTACCTACCAAATGGCCTAGAGTCAAATGGTATTTATCACTCTGATGCAAATGGAGAGCATCGTTCGAGATCCGATGCAACCAATGGCCTTCACATGGCTTCTCCTCTGGAGAATAACTCTACTGCTACAAATGGAACTGTAGGCCAGACCCATCTGCAGAGGGACACCCCTGGAGCTAATGGAACTAATGCTCACATACAATACCAGGGATTTTTGACCTCCAGTGGGAGGGATGAGCAGGCAGATATGGGACCACGGGATGGTAATGGAGGGGTCTATGCAAGTAGCAATAGTAGAGCCAACTCTGCTGATGACAAGGAAGTGGAGGCTTTCCAAAATGGGGAGAGCGGTATGAAGTCCAGGATTCCCACATTGGCGGGTAATAATAATCAAGTTGAGGCTGAATGGATTGAACAATATGAACTCGGTGTTTATATAACTCTTATGGCCCTCCAAGACGGAACTAGAGATCTCAAGCGAGTGCGCTTCAGTCGGAGAAGATTTGGAGAGCACCAAGCAGAAACTTGGTGGTCAGAAAACCGTGAGAAGGTGTATGAAAAGTATAACGTTCGGGGGTCAGACAAGTCATCTTCAGGGGCATCTGGCCAGTCAGCACGCAGAACAGAGGAAGTAGTCTCACCACCTTCCCAACCTTAG 3402 0.4544 MADLVSYGNAEQALIALKKGAQLLKYGRKGKPKFCPFKLSNDESSLIWLSSGGERKLKLASVSKIIPGQRTSVFQRYLRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKTLISSGQCGRSKIDGWSDGGLYFDDSRDLTSNSPSDSSASATRDISSPETSTSLNASPLPKSCPPESSVSSERSHVAVEHTNMQVKGSASDAFRVSVSSAPSTSSHGSAQDDYDALGDVYIWGEVTCDNLVRVGADKNVNPLSSRADVLLPKPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGTGRDAIQPRLVESLAVSNVDFVSCGEFHTCAVTMAGELYTWGDGTHNAGLLGHGTDVSHWIPKRVSGPLEGLQVASVTCGPWHTALLTSTGQLFTFGDGTFGVLGHGNRESVAFPREVESLIGLKTIAVACGVWHTAAVVEVIMTQSSASFSSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPSLIDYNFHKIACGHSLTIGLTTSGHVFTMGSTVYGQLGNPHSDGKLPCLAEDNLVGESVEDIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKFIACGSNFTAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALSPNPGKPYRVCDSCHTKLNKVSEASNNNNRRNVIPRISGENKDRLDKAEIRLSKSTVPTNMDLIKQLDSKAAKQGKKADNFSLIRSSQAPSLLQLKDIPFSSAVETRLTVPKAVLTSVGQSGVSSRAVSPFSRKPSPPRSATPIPTTSGLSFSKSITDSLKKTNELLNQEVQKLRAQVDSLSKRCELQEFELQKSSKKTQEAMALATEESARSKAAKEVIKSLTAQLKDMAERLPPGVYESDSMKPVYLPNGLESNGIYHSDANGEHRSRSDATNGLHMASPLENNSTATNGTVGQTHLQRDTPGANGTNAHIQYQGFLTSSGRDEQADMGPRDGNGGVYASSNSRANSADDKEVEAFQNGESGMKSRIPTLAGNNNQVEAEWIEQYELGVYITLMALQDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKYNVRGSDKSSSGASGQSARRTEEVVSPPSQP* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01434 1133 Coils Coil 881 901 - -
Eupl13g01434 1133 FunFam PH, RCC1 and FYVE domains-containing protein 1 455 626 - -
Eupl13g01434 1133 SUPERFAMILY RCC1/BLIP-II 232 622 IPR009091 -
Eupl13g01434 1133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 698 IPR013083 -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 295 346 IPR000408 -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 792 820 - -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 926 1021 - -
Eupl13g01434 1133 Gene3D - 9 125 IPR011993 -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 517 568 IPR000408 -
Eupl13g01434 1133 SUPERFAMILY FYVE/PHD zinc finger 621 693 IPR011011 -
Eupl13g01434 1133 Pfam FYVE zinc finger 621 687 IPR000306 GO:0046872
Eupl13g01434 1133 Pfam Pleckstrin homology domain 11 119 IPR001849 -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 1103 1133 - -
Eupl13g01434 1133 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 388 398 IPR000408 -
Eupl13g01434 1133 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 281 291 IPR000408 -
Eupl13g01434 1133 Pfam Transcription factor regulating root and shoot growth via Pin3 1048 1103 IPR013591 -
Eupl13g01434 1133 FunFam PH, RCC1 and FYVE domains-containing protein 1 204 454 - -
Eupl13g01434 1133 Gene3D - 182 357 IPR009091 -
Eupl13g01434 1133 Gene3D - 358 454 IPR009091 -
Eupl13g01434 1133 Coils Coil 825 859 - -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 388 404 IPR000408 -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 297 313 IPR000408 -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 564 585 IPR000408 -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 347 363 IPR000408 -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 506 524 IPR000408 -
Eupl13g01434 1133 PRINTS Chromosome condensation regulator RCC1 signature 404 418 IPR000408 -
Eupl13g01434 1133 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 53 896 - -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 569 620 IPR000408 -
Eupl13g01434 1133 Gene3D - 455 626 IPR009091 -
Eupl13g01434 1133 ProSiteProfiles BRX domain profile. 1049 1104 IPR013591 -
Eupl13g01434 1133 SUPERFAMILY PH domain-like 11 119 - -
Eupl13g01434 1133 CDD PH_PLC_plant-like 11 120 - -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 465 516 IPR000408 -
Eupl13g01434 1133 Pfam Transcription factor BRX N-terminal domain 876 909 IPR027988 -
Eupl13g01434 1133 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 625 687 IPR017455 -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 942 991 - -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 233 294 IPR000408 -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 1106 1133 - -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 402 450 IPR000408 -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 464 511 IPR000408 -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 295 343 IPR000408 -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 347 398 IPR000408 -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 570 617 IPR000408 -
Eupl13g01434 1133 Pfam Regulator of chromosome condensation (RCC1) repeat 516 565 IPR000408 -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 347 401 IPR000408 -
Eupl13g01434 1133 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 402 453 IPR000408 -
Eupl13g01434 1133 MobiDBLite consensus disorder prediction 143 191 - -
Eupl13g01434 1133 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 440 450 IPR000408 -
Eupl13g01434 1133 SMART fyve_4 619 688 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01434 Eupl-Chr13 30166080 30185307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01434 1050 1106 Major Intrinsic Protein MIP AT1G31880 52.632 9.96e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01434 - - nnu:104590345 1858.96