Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01426 ATGGTGAGGAACGATTTGTTCATCACCGTTCCGAACTTCTTCAAGTGTCCAATCTCACTCGACGTGATGAAATCTCCAGTGAGTCTCTGCACTGGCGTCACCTATGATCGGTCCAGCATCCAGACATGGCTCGACAATGGCAACAACACATGTCCGGCCACCATGCAGGTCTTGCAGAGCAAAGATTTCGTGCCTAACCACACTCTCCAGCGTTTGATCCGGATCTGGTCTGATTCCGTCGAGAACACATCCGAATCTGACGTCTCTCCGGCATCCACGTCTCCTTCCCCTGTCTCACAAAAACAAGCGAGAGATTTGTTCAAGAACGTCGAAACCAGAGGTGAAAACTGCTTCGATTGTTTGTCGAAGATTTCCAATTTCGCGAAAGAGTCCGATGAGAATCGGAAATTTCTCGCGAAGATCGACGGTTTTGTTCCTGTACTTTTCGGTGTTTTAAACAATGCCGATGTCGATTGTGATGTAAAAATCGGACTGTTTGAACAGACGATTAGGATTTTGGATTTGGCTCTTACGGATTACAGAGATAAAGAACAACTAACGAGATCAATGACGAGAAATCCAGAGTTATTAGCTTCGATTTTTTTAGTTTTGCAGAAAGGAAGCTTAGATTCAAGGATCGGATCGGCTAGGGTTTTGGAAAACCTCGCCATCGATCCTGTATCGAAGCTTTTGATCGCGGAAAAGGAAGGCATGTTGTTCGAATTGTTACATCTGATAAGTTCTGAGACGGAATCGAGTGCGATCGAAGCCGGATTATCTTGCTTAATCGCCGTATCGATGCCAAGACGGATCAGATTACAGATCATACGCCTCGGAGCAGTTCAGATATTGGGAAAACTACTCTCTCAATTAGATTCCAGCGTTTCCATTACAGAAAAGATCTTGAAGCTCTTGGAAATGGTATCGACATGTACCGAAGGCCGGACGGCGATATGCGAAGATCCAATCTGTGTTCCAGCAATAGTTCAGAAAATGTTGAAGGTTTCGGATTCAGCGACGGAGCATGCAGTAGTGATAGTATGGAGCATATGCCATCTGTTCCGTGATCAGAAAGCACAAGAGGCGGTGACGAAGAGTAACGGATTGACGAAGATGTTGTTGTTGATGCAGAGCAATTGCTCGCCATCTGTTCGACAGATGTCCAGCGATCTGCTTAAGATCTTCCGTGTAAACTCTAAATCATGTCTTTCTAGCTATGATACAAAAACCACACATATCATGCCTTTCTGA 1251 0.45 MVRNDLFITVPNFFKCPISLDVMKSPVSLCTGVTYDRSSIQTWLDNGNNTCPATMQVLQSKDFVPNHTLQRLIRIWSDSVENTSESDVSPASTSPSPVSQKQARDLFKNVETRGENCFDCLSKISNFAKESDENRKFLAKIDGFVPVLFGVLNNADVDCDVKIGLFEQTIRILDLALTDYRDKEQLTRSMTRNPELLASIFLVLQKGSLDSRIGSARVLENLAIDPVSKLLIAEKEGMLFELLHLISSETESSAIEAGLSCLIAVSMPRRIRLQIIRLGAVQILGKLLSQLDSSVSITEKILKLLEMVSTCTEGRTAICEDPICVPAIVQKMLKVSDSATEHAVVIVWSICHLFRDQKAQEAVTKSNGLTKMLLLMQSNCSPSVRQMSSDLLKIFRVNSKSCLSSYDTKTTHIMPF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01426 416 SUPERFAMILY RING/U-box 5 78 - -
Eupl13g01426 416 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Eupl13g01426 416 SUPERFAMILY ARM repeat 118 398 IPR016024 -
Eupl13g01426 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Eupl13g01426 416 Gene3D - 89 407 IPR011989 -
Eupl13g01426 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Eupl13g01426 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Eupl13g01426 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Eupl13g01426 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Eupl13g01426 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01426 Eupl-Chr13 29904920 29906461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01426 1 416 U-box Gene Family AT5G09800 52.392 3.69e-137 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01426 - - nnu:104590340 598.971