Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01424 ATGTCGGACCCAGTGGAGTACCGTTGTTTTATTGGGGGCCTCTCTTGGTCGACATCTGATAGAGTTCTGAAAAATGCTTTTGAAAAGTTTGGCCATCTTGTTGAAGCAAAGGTAGTGGTAGACAGATTCTCCGGTCGCTCTCGTGGATTTGGGTTTGTCACTTTTGATGACAAGAAAGCAATGGAAGAAGCTATTGATGAAATGAATGGTATGGATCTGGACGGTCGACCTATTACCGTCGATAAAGCTCAGCCTCATCAAGGCTCTGGTCGAGACCGTGATGGGGATCGGGACCATGACCGTGACCGCGGTCGTGACCGTGGCCGTGACTATGGAAGTGGACGGGGGGGATCAAATGGTGGAGAGTGCTTTAAATGTGGCAAGCCTGGGCATTTTGCCAGGGAGTGTCCATCTGGTGAAGGGGCAAGAGGGGGAGGCAGGTACAGTGGAAGGGATGATAGGTACAGCAGTGGTGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTAGTGGTCGCTATGGACCTGATCGTAATGGGGATCGTTATAGTGGACGCAACAAAGATGCCGGTAGTCGTGGGGGGTCGGGAAGTGACCGATATAGTCGTGATCGTTCTGGTCCATATGAGCGCCGTGGCCCAGGAGGTTTCCGGTCCTGA 654 0.5352 MSDPVEYRCFIGGLSWSTSDRVLKNAFEKFGHLVEAKVVVDRFSGRSRGFGFVTFDDKKAMEEAIDEMNGMDLDGRPITVDKAQPHQGSGRDRDGDRDHDRDRGRDRGRDYGSGRGGSNGGECFKCGKPGHFARECPSGEGARGGGRYSGRDDRYSSGGGGGGGGGGGSGRYGPDRNGDRYSGRNKDAGSRGGSGSDRYSRDRSGPYERRGPGGFRS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01424 217 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Eupl13g01424 217 CDD RRM2_NsCP33_like 8 83 - -
Eupl13g01424 217 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Eupl13g01424 217 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 211 - -
Eupl13g01424 217 Gene3D - 2 118 IPR012677 -
Eupl13g01424 217 MobiDBLite consensus disorder prediction 86 112 - -
Eupl13g01424 217 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
Eupl13g01424 217 SMART rrm1_1 8 81 IPR000504 GO:0003723
Eupl13g01424 217 Gene3D - 119 159 - -
Eupl13g01424 217 SUPERFAMILY Retrovirus zinc finger-like domains 108 142 IPR036875 GO:0003676|GO:0008270
Eupl13g01424 217 MobiDBLite consensus disorder prediction 69 217 - -
Eupl13g01424 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Eupl13g01424 217 SUPERFAMILY RNA-binding domain, RBD 7 117 IPR035979 GO:0003676
Eupl13g01424 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01424 Eupl-Chr13 29892156 29895221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01424 9 84 Eukaryotic Initiation Factors Gene Family AT4G34110 34.211 3.00e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01424 - - rcu:8271877 266.929