Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01401 ATGGCTCCATTGCAGAAGCTCTTCCCGTTTAACGGCTCGGTTAGGAAACGTACAGAGGCGCCGCGGTGCCTCTGCTCGCCTTTATCACTGCAGTCGAAGAAATTCAAATCGTTAAAGGAGATAATGAAAACAGCTAAACATTCCGTGATGAATAGAGATTATGGTGATTTGTGGTGTGAGGAATGTAGGTCTGGAGATCAAGCTGATGAGATGCTTCTGTGCGATAAATGCGATAAGGGATTTCACATGTATTGTTTGAGACCAATCGTGGTTAGAGTCCCGATTGGGTCCTGGTTTTGCCCTAGCTGTTCAGGGCTGGGTCGAGTAAGAAGTTTTCCATTAAAGCAGACAAGGATCGTCGATTTTTTTCGGATTCAGAAGTGTTCTGATGAGCAGGAGAAATGTGCATCTCCTCAAGATGGTAAGAAGCGTAGGAGACGTTCTGGGCCATTGGTGATGTATAAGAAGAGGAGGAAATTACTGCCTTTCAATCCCACTGAAGATCTGGCACGAAGGCTAGCACAAATGGGTTCACTTGCCACTGCTTTAACAGCATTGCATGTGGAATTTAGCAATGACCTCACTTACATGCCTGGCATGGCCCCTAACTGTGCTAATCAAGCCAGGTTCGAAAAGGGCGGCATGCAGGTTCTCTCTAAAGAAGATACAGAAACCTTGGAACAGTGCAGAGCCATGTGCAAGAGAGGAGAATGGCCTCCCCTTGTAGTAGTTTTTGATTCTTGTGAAGGTTTCACTGTGGAGGCCGATAGCCAGATAAAGGATATGACGCTTATCACAGAATACACCGGCGATGTCGATTACATTAAAAACCGGGAACAGGACGATTGTGATAGCATGATGACCCTCCTTTTAGCAACAAACCCATCTAATAGTCTTGTTATCTGTCCTGATATACGTGGAAACATTGCTCGCTTCATTAATGGCATTAACAACCATACTTCGGACGGTAGGAAGAAGCAGAATCTAAAATGCGTCAGGTATAATGTAAATGGTGAATGCCGGGTCCTACTGGTTGCTACTCGTGATATTGCTAAAGGGGAGAGGCTGTACTACGACTACAATGGATATGAGCAGGAATACCCAACTCATCATTTTGTCTGA 1122 0.451 MAPLQKLFPFNGSVRKRTEAPRCLCSPLSLQSKKFKSLKEIMKTAKHSVMNRDYGDLWCEECRSGDQADEMLLCDKCDKGFHMYCLRPIVVRVPIGSWFCPSCSGLGRVRSFPLKQTRIVDFFRIQKCSDEQEKCASPQDGKKRRRRSGPLVMYKKRRKLLPFNPTEDLARRLAQMGSLATALTALHVEFSNDLTYMPGMAPNCANQARFEKGGMQVLSKEDTETLEQCRAMCKRGEWPPLVVVFDSCEGFTVEADSQIKDMTLITEYTGDVDYIKNREQDDCDSMMTLLLATNPSNSLVICPDIRGNIARFINGINNHTSDGRKKQNLKCVRYNVNGECRVLLVATRDIAKGERLYYDYNGYEQEYPTHHFV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01401 373 SUPERFAMILY FYVE/PHD zinc finger 52 104 IPR011011 -
Eupl13g01401 373 Pfam SET domain 278 361 IPR001214 GO:0005515
Eupl13g01401 373 Gene3D SET domain 145 373 IPR046341 -
Eupl13g01401 373 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
Eupl13g01401 373 CDD PHD_BAZ2A_like 59 103 - -
Eupl13g01401 373 CDD SET_ATXR5_6-like 236 373 - -
Eupl13g01401 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 132 371 - -
Eupl13g01401 373 SMART PHD_3 58 104 IPR001965 -
Eupl13g01401 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 111 IPR013083 -
Eupl13g01401 373 Pfam PHD-finger 59 104 IPR019787 -
Eupl13g01401 373 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Eupl13g01401 373 SUPERFAMILY SET domain 191 361 IPR046341 -
Eupl13g01401 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Eupl13g01401 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01401 Eupl-Chr13 29401809 29404883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01401 59 120 C2H2 Transcription Factor Family AT3G01460 40.323 5.48e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl13g01401 SET 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01401 K24406 - nnu:104590330 636.336