Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01379 ATGACTAATAGTGTCAGGAGGAGGACTTCTAAATGGGATTTGAAAGAAGATACCCATCATTTTCCAACTGAAACCAGACAAGACAATGCTGTGCCTGAGAAAGTAGGCGTGTCCATTCATGATAAAGAATCAAAATCAGAGTGGAATTCTTCGAAGGGTGCTGGTAGTCATGATCCAAAGTGGTCTGATGTGGAAGCCAACAGTGCTGTGAAATCTAAAGGTAATTCTGAATGGTCTAATAGGGAGCCCTTGCCTGAAAACAGAAGCGAACAGAAGGATGAGAACATAAGTAGAGACTGTTATGAGGTTACACAAACATGGGATGGGGATCAAAGTTACAGCATGAGTATGTCTCCTGGTCTTGATGTATGGAGAGAGCAAAATCATAGTCGCTCCCCAAATAGCAGTTGGAGCAGATCACGAAGGAGTAGAAGCAGGAGCCAGGACCATGGTTTTAGGCGAGAATTAGAAGGCTGGAATGACAGGATTAGAAGTGGATCAGGAGTATCCGCTCCACAATGTAATGATTTTGCAGCAGGGAGGTGCAGGCGAGGTAGTCAATGCAAGTTTCTTCATCAAGATAATCATGATTATGAGGGTAGTAGGCATTCAGGAAGTGGTCCAGCAGAAAACTGGGGAAGTAGACATGAGCGGGAAGGATCTTCAGGGCATGCTAACATCAAAGAGCAAAGGGATTACTCACGGGATAAGATTTCTCGTGGGTATGGGAATTACTACGATGGAGAACGGGAGAAGCATGCGGTCACAAGGAACAACAGATCTGCTGTTAGGTGTAATGATTTTCTGAAAGGCAAATGCTATAGAGGATCATCATGCAAATATGCCCATCATGGTGCTTTGGCTGATGGCCATGGGACAAGAGAAAGGGTCCACTCCAGGAGGGACATAAATGTGTCTTTTGGGCATGACCACAGGCGTGAATTCCACAGGAGTAACGATACTCCTTGCAAGTTTTTTGCCTCAGGCAATTGCCGTAACGGAGAATATTGCAGGTTCTCTCATGATGATGCACCACTTGGTAGTCCAGAAGGGAGGCCTCGGGATGATAGGTGGGGTCATAAATTGGGTAATGAGAATAGATTGTGGGAAGGCCCAAAACGGAGTGATAAAGAAGCTGACTCAGCACATGGTGGTGCAGAAGGTCGGTCACTGGATGATAGGTGCAATAATGAGAATAGTTTGTGGGGAGGTCCAAAATGGAGTGATAAAGCTGCTGACTCTGATTTAACAAAGTCCCTGCGGTGGAAGAATGATAAAGATGTTGGAAAAGTGGTTGTTCCCGAATCGAGGACTACTGAGAGGTCTTTGGTTGATAGGTGGGGCCATAGCTTGGACAATGAGAGTAAAACATGGGGAGGTCCAACACGGAGTGATAAACCAGCTGATCAAGATGCACATAAATCTCCTCAATGGATAAGTGACAATAATGGTGCAAGCATGGGTGTTCCAGAATTAAGGGGTGGCCCGAAATTGCTTAATGCTACAAACATGCCTTCTGCAGGGGGTAACCTGCACTTTATTGACAAAGAAGATACAGGGCATAATCATCAAAATTCACCATCTAAAAATCCAAATGATATTACTTTACCCACCTGTGAACAGAATATAACTAGAGAAGTTTCAGGTCAGCAGCATGCTGCCACAGTCATAACGCAACCGAGAGTATCTGAAAATACTTATATTCAGCATCATGCCAGTTTGACAGGGGCTGCTGCTGCATTCTCCTGTGACGATAGCAATGCGGTCAACAGGAGTGCCAAACCACAGAATGAGATCGACTTCTCTGCAAATATTCTGCCTACTATGATTCCTATGCCCGGACAAAGCTTCAACCAGAAGGGTCAGAACATAGCCCCTCAACCTCTTTCAAGCTTTAATATGAATGCTGTCAACGGGCAAAGTCAACAGATTCTCCTTCCACTTGCTTCAAGTGGACAAAGTTTCAGCCTGAATGGGCAGGTCCAAAGCTCTCAGCCCTCTTCAAATCCACAACATCAAACAGTGACTTATCAGGAGGACCCAATTAACAAACCAGATATGGTTGATCCAAAAATGTCACATTTAACCTCTGGACCTTCAATGAGTCAAAATGTAGTAACTAATGAGAAGGTCAACCAAATAACAAACCTTTCAGCGTCTCTGGCTCAGATATTTGGAAATAGCCAGCAGCTTCCGCAACTATATGCTGCTCTAAACCCCTCCAATGATATGGGGTTGATGCCTTCCCAACCCAAGTCTGCAGGGGCAGTTGCACCATTGGGTGAAACGTTGGTTCAGTCTAATCAAGCCACTTGGTCTCAAAAGCAGTATGATCCTATCAGTGATAGTTTGAGTAAGTCTGACATCAGTATCGATCCCCCAGGTTTTTCAGTGAATCCCATTGAGCAGAATAAGACTGCTGATGGAGAATCGCAAATCTCATTGAAAAGCATTCCCCAATCAGCTCTTACTGGTGAGCCCAGTGTAGGTGATGCTCCTAAGATTGTTGGTTTGGAAGAAAAACTTCACCATGAGAGTCATGAGTTGAAGCAGGTAGAGCCAGTCGTAGATTCCGAGGCTAATAAAGTGAATGAAAGAGCAGCTAACCATATCAAGAAAGAGCAAGAAACTACTCATTCAGAGGACATGGATGCAGATGGTCTGGTGAATGAAGATGGTAAGAAAATCAAGGATTCAAAGGGGGTGCGTATGTTCAAATTTGCACTTGCGGAGTTTGTTAAGGAGATTCTAAAGCCCACGTGGAAGGAAGGTCAAATGAGTAAGGAGGCTCACAAAACCATAGTGAAGAAAGTCATCGATAAAGTAACTGGTACCATTCAAGGGGCTCATATTCCTCAAACACAAGAGAAAATTGATCATTATTTGTCATATTCAAAACCCAGGCTTACCAAACTTGTACAGGCATATGTGGAAAAATATCTGAAGAGTTAG 2952 0.4407 MTNSVRRRTSKWDLKEDTHHFPTETRQDNAVPEKVGVSIHDKESKSEWNSSKGAGSHDPKWSDVEANSAVKSKGNSEWSNREPLPENRSEQKDENISRDCYEVTQTWDGDQSYSMSMSPGLDVWREQNHSRSPNSSWSRSRRSRSRSQDHGFRRELEGWNDRIRSGSGVSAPQCNDFAAGRCRRGSQCKFLHQDNHDYEGSRHSGSGPAENWGSRHEREGSSGHANIKEQRDYSRDKISRGYGNYYDGEREKHAVTRNNRSAVRCNDFLKGKCYRGSSCKYAHHGALADGHGTRERVHSRRDINVSFGHDHRREFHRSNDTPCKFFASGNCRNGEYCRFSHDDAPLGSPEGRPRDDRWGHKLGNENRLWEGPKRSDKEADSAHGGAEGRSLDDRCNNENSLWGGPKWSDKAADSDLTKSLRWKNDKDVGKVVVPESRTTERSLVDRWGHSLDNESKTWGGPTRSDKPADQDAHKSPQWISDNNGASMGVPELRGGPKLLNATNMPSAGGNLHFIDKEDTGHNHQNSPSKNPNDITLPTCEQNITREVSGQQHAATVITQPRVSENTYIQHHASLTGAAAAFSCDDSNAVNRSAKPQNEIDFSANILPTMIPMPGQSFNQKGQNIAPQPLSSFNMNAVNGQSQQILLPLASSGQSFSLNGQVQSSQPSSNPQHQTVTYQEDPINKPDMVDPKMSHLTSGPSMSQNVVTNEKVNQITNLSASLAQIFGNSQQLPQLYAALNPSNDMGLMPSQPKSAGAVAPLGETLVQSNQATWSQKQYDPISDSLSKSDISIDPPGFSVNPIEQNKTADGESQISLKSIPQSALTGEPSVGDAPKIVGLEEKLHHESHELKQVEPVVDSEANKVNERAANHIKKEQETTHSEDMDADGLVNEDGKKIKDSKGVRMFKFALAEFVKEILKPTWKEGQMSKEAHKTIVKKVIDKVTGTIQGAHIPQTQEKIDHYLSYSKPRLTKLVQAYVEKYLKS* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01379 983 MobiDBLite consensus disorder prediction 656 687 - -
Eupl13g01379 983 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Eupl13g01379 983 MobiDBLite consensus disorder prediction 787 812 - -
Eupl13g01379 983 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 981 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 656 680 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 345 394 - -
Eupl13g01379 983 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 192 IPR000571 GO:0046872
Eupl13g01379 983 MobiDBLite consensus disorder prediction 83 99 - -
Eupl13g01379 983 Gene3D - 307 368 - -
Eupl13g01379 983 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Eupl13g01379 983 SMART c3hfinal6 317 343 IPR000571 GO:0046872
Eupl13g01379 983 SMART c3hfinal6 259 285 IPR000571 GO:0046872
Eupl13g01379 983 ProSiteProfiles Zinc finger C3H1-type profile. 317 344 IPR000571 GO:0046872
Eupl13g01379 983 MobiDBLite consensus disorder prediction 444 536 - -
Eupl13g01379 983 Pfam CCCH-type zinc finger 322 342 IPR041367 -
Eupl13g01379 983 ProSiteProfiles Zinc finger C3H1-type profile. 168 195 IPR000571 GO:0046872
Eupl13g01379 983 MobiDBLite consensus disorder prediction 8 27 - -
Eupl13g01379 983 SUPERFAMILY CCCH zinc finger 319 342 IPR036855 GO:0046872
Eupl13g01379 983 MobiDBLite consensus disorder prediction 1 153 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 212 234 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 197 234 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 100 141 - -
Eupl13g01379 983 Gene3D - 169 288 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 343 414 - -
Eupl13g01379 983 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01379 Eupl-Chr13 28837505 28840734 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl13g01379 zf-CCCH_4 3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01379 - - nnu:104589262 886.715