Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01361 ATGACAACTATACGGCAGCGAGATGGAGGAGCGACGGTAGCAGACAACGGCGCCATGCGACACGAGAAGAAGACGGAAGGTATCTTTATCATAAACCTTGGGAAAACATGGGAGAAGCTTCAGCTAGCTGCAAGGGTTATTGTTGCTATTGAGAACCCTCAGGACATTATTGTTCAATCCGCTAGGCCATATGGTCAGAGAGCAGTATTGAAGTTTGCACAGTACACGGGTGCCCACCCAATTGCAGGGAGACACACACCTGGAACATTTACAAATCAGCTCCAGACGTCCTTCAGCGAGCCTCGTCTACTCATCCTCACTGACCCCAGAACTGATCACCAGCCAATCAAGGAAGCTGCACTTGGTAACATTCCAACCATTGCCTTCTGTGATACTGATTCACCAATGAGATATGTCGACATTGGGATCCCTGCCAATAATAAGGGGAAGCACAGTATTGGCTGTCTGTTCTGGTTGTTGGCGAGGATGGTTCTGCAAATGCGAGGCACTATTCTTCCTAGGCACAAATGGGATGTGATGGTAATAACATTCCTGTTTCTTTTTTCTACAATGTTGTTTGTGAATTGA 588 0.4694 MTTIRQRDGGATVADNGAMRHEKKTEGIFIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHPIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILPRHKWDVMVITFLFLFSTMLFVN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01361 195 CDD RPS2 23 166 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 PANTHER 40S RIBOSOMAL PROTEIN SA 22 186 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl13g01361 195 Pfam Ribosomal protein S2 99 164 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 Pfam Ribosomal protein S2 24 94 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 Gene3D - 14 190 - -
Eupl13g01361 195 ProSitePatterns Ribosomal protein S2 signature 2. 101 125 IPR018130 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 SUPERFAMILY Ribosomal protein S2 24 180 IPR023591 -
Eupl13g01361 195 NCBIfam 30S ribosomal protein S2 21 185 IPR005707 GO:0003735|GO:0006412|GO:0015935
Eupl13g01361 195 PRINTS Ribosomal protein S2 signature 27 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 PRINTS Ribosomal protein S2 signature 76 93 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 PRINTS Ribosomal protein S2 signature 118 129 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 PRINTS Ribosomal protein S2 signature 139 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Eupl13g01361 195 FunFam 40S ribosomal protein SA 12 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01361 Eupl-Chr13 28436144 28446567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01361 22 186 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 86.061 1.53e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01361 K02998 - msin:131228181 320.472