Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01347 ATGGGTCTTAATTTCTTGACAACTCTTTTGGAGTTTTTAATGGCGGTAGGAGTCCTCCCGCCAGGTTTTCGTTTTCATCCTACCGATGTTGAGCTTGTCAAGTACTACCTTGAACGTAAAGTCACGGGAAAATCACATTTCAAAGCCATTGAGGAGCTAGACCTGTACAAGTTTGCTCCTTGTGATCTTCCAGAAAGATCTTGGTTGCAAAGCGGAGACCTTGAATGGTATTTCTTTTGCCCTAGAGGTAGGAAATACCGGAATGGGCAGAGGGTAAATCGTTCCAATAAATTTGGATTTTGGAAAAGTACTGGAAATGATAGACCAGTTTATCACAAATCACAGAAAGTGGGGATGATAAAGACGTTGGTTTTTCACGAAGGACAGGCACCAGGAACTAGAACGGATTGGGTTATGTATGAATATAGACTTGAAAACAAGGATCTGGATGATGCTGGCATCTTGCAGGATGCATATGTGCTTTGCAAAATCTTCGAAAAGAGTGGTCCAGGTCCAAAAAATGGTGAGCAACATGGAGCACCATTTAAAGGGGAAGATTGGGATGCGGTAAATGGTTCCTTGGGACCTTTCTCTTTTTCTGACCCTGGTTCTTCATCAAGTGTGCCGGTTGATGATCAAACTATCGCTGGGGAAAATAGTGCGCCTGTCCTTGGGAACACATCTTCATCAGAGAATCCTAGTCAAACCGTGTCATCTAATGCTGTAGAAGAGCATCCTTCCTTGCCAATGGGTGATGAACTTGAAGCTATGTTGGCATATTTTTATGTTGAAGACGGTCCGCTCCTTCATAGTGGCGATATTAACAATGAGATGATGGACTCATCCAATGCTGGAAGTACTGTTGAGGCTCCAACTCATTTGAATGGCTATGATGCTTATAATGGTTTGCCTGACCTCAGCACCCTGGCAGAGTGGAAAGCAATTGATGAAATCCAATTCCCTAACTGTCTGGGAACTAAAAATATTCTTGATCAAACGCTTTTGGGAGATGATGTGTCCTATATGGAGTTGGATGATCTCGAGTCCCCAATGCAATCCCCCGTGGAAGAAATCAGTGGATGTGATGCTGCCATAGATAATCATGCTGCTCCTTCAGGCGAAAAAGCTGAAGAAAGTGGAAATACATATGCTCCGCTAGCCCTGGCAAGAGGTGCACAACATGGAGCTTCCTATTCAAGCGTTCAGTCCCTGTTGGGTTCTATCCCTGCTCGTCCTGCCTTAGCGGCAGAGTATCCATCTACCAACGAGGAGAAGATATGCAAGAGCAGTAGTCTCTTGTCTTCCTATGGTGGTTCCTCCATCCATGTCAAGGCAGATGTGACTGTACAGTGTGGGTGCACTAACAACACTTTGTCAGGCAAGTTGGGGAAGTCCACTTGTGTTTGTTGTCATGGTTGCAACCTCCCAAGGAGGAAGTTTTGGGGGGCAGCTACATGCAGCAGTTGTTTCACATTTGTGTTTTTATTAGGCTTGGTCGCAGTTCTGATGTGGGTTTCTCCCTTTGCAATAGGTGCCACAGTTTGCAAGCATGCGTGGAAGCGAAGTCGTCTCTCTTAG 1578 0.4506 MGLNFLTTLLEFLMAVGVLPPGFRFHPTDVELVKYYLERKVTGKSHFKAIEELDLYKFAPCDLPERSWLQSGDLEWYFFCPRGRKYRNGQRVNRSNKFGFWKSTGNDRPVYHKSQKVGMIKTLVFHEGQAPGTRTDWVMYEYRLENKDLDDAGILQDAYVLCKIFEKSGPGPKNGEQHGAPFKGEDWDAVNGSLGPFSFSDPGSSSSVPVDDQTIAGENSAPVLGNTSSSENPSQTVSSNAVEEHPSLPMGDELEAMLAYFYVEDGPLLHSGDINNEMMDSSNAGSTVEAPTHLNGYDAYNGLPDLSTLAEWKAIDEIQFPNCLGTKNILDQTLLGDDVSYMELDDLESPMQSPVEEISGCDAAIDNHAAPSGEKAEESGNTYAPLALARGAQHGASYSSVQSLLGSIPARPALAAEYPSTNEEKICKSSSLLSSYGGSSIHVKADVTVQCGCTNNTLSGKLGKSTCVCCHGCNLPRRKFWGAATCSSCFTFVFLLGLVAVLMWVSPFAIGATVCKHAWKRSRLS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01347 525 MobiDBLite consensus disorder prediction 193 247 - -
Eupl13g01347 525 ProSiteProfiles NAC domain profile. 19 167 IPR003441 GO:0003677|GO:0006355
Eupl13g01347 525 SUPERFAMILY NAC domain 9 167 IPR036093 GO:0003677|GO:0006355
Eupl13g01347 525 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Eupl13g01347 525 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 231 - -
Eupl13g01347 525 MobiDBLite consensus disorder prediction 197 243 - -
Eupl13g01347 525 Gene3D NAC domain 28 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01347 Eupl-Chr13 28128121 28151894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01347 14 351 NAC Transcription Factor Family AT5G09330 40.110 8.32e-74 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl13g01347 NAM 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01347 - - nnu:104606761 419.083