Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01345 ATGGGTGTTGACTTCTTCTGGACACTTTTGGAGTTTTTAACGGCGGTAGGAGTCTTCCCGCCAGGTTTTGGTTTTCATCCCACCGATGTTGTGCTTGTCATGTACTACCTTAAGAAAAAAGTCACGGGAAAACCACATTTCAAAGCCATTGAGGAGCTAGACCTGTACAAGTTTGCTCCTTGGGATCTTCCAGCTAAATCTAGGTTGGAAAGCAGAGACCTTGAGTGGTATTTCTTTTGCCCTAGAAATAGGAAATATGCGAATGGGAAGAGGAAGCATCGTTCTACTGAAATAGGATTTTGGAAAAGCTCTGGAGAGGATAGACCTGTTTGTCATAATTCACAGACTGTGGGGATGATAAAGACACTGATTTTTCACATAGGACGGGCACCAAAAGGAAATAGAACGGATTGGGTAATGCATGAGTATAGACTTGAAGACAAGAATCTGGTTGACGCTGGCATCCCACAGGATGCATATGTCCTTTGTAAAATCTTTAAAAAGAGTGGTCGAGGTCCGAAAAATGGTGAGCAACATGGAGCACCATTTGAAGAGGAAGATGTGGTAAATGGCCCCTCGGAACTTGTCTCTTTTGCTGACCGTGGATCTTCATCACTTGCGCCGGCTGATGATCAAACTATCACTGTGGAAAATAGTGCCCTCGTCCTTGGGAACACACGTATGTCTTCATTGGAGTTTCCTTGTCAAACTGTGTCATCATCTAATGCCGTAGTGGAGCATCCTTCCTTGCCAGCAGAGCTGAAACGTATTTATGAATTCCATTTCCCTAACAGTCTGGAAAATGAAATGGAAGATGGTATGGGGTTGACCGATCTTGTGAATCCAATAGAATACCCCACTAATGGCTCTGAGCAAATTCCATGTGAGGACCCTTGCGGCCGCGACAATGCTAATAATAATTTGGAAGGGTTCTGTAACTCCACCCTTCCTGTGGATGCTATTCTGCCTACATCTGGTGTAAGCACGTCTCATGCTTTGGTGCCAACAAGAATGAAATGCCCTGTGGAAGATAATGGTTCTGAGCACATTCCATGTGAGGACCCACACTTCTACAACAATTATGATAATTTGGGAGGCATCTGTAACTCGGGCCTTCCTTCGGATGTTGTTCTGCCCCCGTCTGGTATAAGCATGCCTCATTCTTTGGTGCCAACAGGATCTGCTATATTTGAGGCTAAGTTGGCTATGGTTTCAAAGGATATGGATCAAACGCTTTTGGGAGATGAATCGTTTATATACTGGAGTGATCTCGAGTTCCCACTGGAATGCTCCATAGAAGCTAATGGTTCTGAGCACATTCCCAACTGCTACATCAATTATGGTAGTTCGGAAGTTCTCTATAACTCGGGATCTGGTATCTTTGAGGATAACATGGCTATGGTTTCAAAGGATAATGGTTTTGGAGGAAATGCGATCCCTGGATATGATTCTGCCTATAATCTTGCTGCTGCTTGGGGTGGAAGAGCAGAAGAAAATGGAAATACAGATGCCTCTCTCTATCCTCATTGGCATTTTGATGCCAGGAACCATGATACCCAAGGGCAGTAG 1569 0.4436 MGVDFFWTLLEFLTAVGVFPPGFGFHPTDVVLVMYYLKKKVTGKPHFKAIEELDLYKFAPWDLPAKSRLESRDLEWYFFCPRNRKYANGKRKHRSTEIGFWKSSGEDRPVCHNSQTVGMIKTLIFHIGRAPKGNRTDWVMHEYRLEDKNLVDAGIPQDAYVLCKIFKKSGRGPKNGEQHGAPFEEEDVVNGPSELVSFADRGSSSLAPADDQTITVENSALVLGNTRMSSLEFPCQTVSSSNAVVEHPSLPAELKRIYEFHFPNSLENEMEDGMGLTDLVNPIEYPTNGSEQIPCEDPCGRDNANNNLEGFCNSTLPVDAILPTSGVSTSHALVPTRMKCPVEDNGSEHIPCEDPHFYNNYDNLGGICNSGLPSDVVLPPSGISMPHSLVPTGSAIFEAKLAMVSKDMDQTLLGDESFIYWSDLEFPLECSIEANGSEHIPNCYINYGSSEVLYNSGSGIFEDNMAMVSKDNGFGGNAIPGYDSAYNLAAAWGGRAEENGNTDASLYPHWHFDARNHDTQGQ* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01345 522 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 225 - -
Eupl13g01345 522 ProSiteProfiles NAC domain profile. 19 168 IPR003441 GO:0003677|GO:0006355
Eupl13g01345 522 SUPERFAMILY NAC domain 8 168 IPR036093 GO:0003677|GO:0006355
Eupl13g01345 522 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Eupl13g01345 522 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g01345 Eupl-Chr13 28020599 28042704 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01345 21 221 NAC Transcription Factor Family AT5G64060 53.738 1.53e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl13g01345 NAM 1.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01345 - - nnu:104606761 325.094