Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g01333 ATGTCTCGGATACTGGTACAGCCGATAGGGCAAAAGAGACTAACAAACGTGGCGGTGGTTCGTCTGAAGAAGCATGGAATGCGCTTCGAGATCGCCTGCTACAAGAACAAGGTTCTCTCATGGCGTTCTGGCGTAGAGAAAGATTTGGATGAGGTATTGCAGTCACAGACTGTTTATTCAAATGTTTCAAAAGGAGTACTTGCCAAGTCAAAAGATTTGAATATGGCCTTTGGGACGGATGATCATTCAAAGATATGCTTGGAGATTTTGGACAAAGGAGAGCTTCAAGTTGCAGGGAAGGAAAGGGAGTCTCAGTTATCAAGTCAGTTCCGGGATATTGCAACAATTGTCATGCAGAAGACTATCAATCCAGAAACTCAATGTCCTTATACTATTAGCATGATTGAGCGGCTTATGCATGAAATCCATTTTGCTGTTGATCCTCATAACAGCTCAAAAAAGCAGGCCCTAGAAGTTATCCATGAGCTTCAGAAGCACTTCCCCATAAAGAGGTCCCCAATGAGACTAAGACTAACCGTACCTGAAAAGAATTTTTCTTCCCTAATGGAGAAGCTCAATGCCTGGAATGGTAGCATTGTTTCTAAAGATGAATCTGGAAATCAGCTATCTGTGGTCTGTGAATTAGAACCTGGTTTTTTCCGGGACTGTGATGTGTCAGTAAGGAATCTGCAGGGGCGGTTAGAAATACTTGCTGTATCTGTGCATGTAGAGGGGGATAACCGTGTTGATCTCTATGATGATCATGAGGACAATCCATCAAGCCATTCGAAGGAGTCTACTAGTTCTGTGCTCCAACTAAGTGATAAAATAGAGAGACAGACCATCTCTACAGGAAATGAGAATGCCGAAGGACAGGTCAAGCAGAACAAGTGCACTACATGCAATGCAGCTGTGGGGGATGCCAAGCAATATAGGGATCACTTTAAGAGCGAGTGGCACAAGCATAACCTGAGGCGCAAGACCAGGCAGCTCCCTCCCCTAACTGCAGAAGAATGCATGGCGGATGTGGAATTGGGTGACGTGAAGGCAGATTTGAAGGATTATTCATTTTAA 1074 0.4423 MSRILVQPIGQKRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLNMAFGTDDHSKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTINPETQCPYTISMIERLMHEIHFAVDPHNSSKKQALEVIHELQKHFPIKRSPMRLRLTVPEKNFSSLMEKLNAWNGSIVSKDESGNQLSVVCELEPGFFRDCDVSVRNLQGRLEILAVSVHVEGDNRVDLYDDHEDNPSSHSKESTSSVLQLSDKIERQTISTGNENAEGQVKQNKCTTCNAAVGDAKQYRDHFKSEWHKHNLRRKTRQLPPLTAEECMADVELGDVKADLKDYSF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g01333 357 Gene3D Classic Zinc Finger 286 346 - -
Eupl13g01333 357 Gene3D - 2 96 IPR036786 -
Eupl13g01333 357 Gene3D - 100 172 IPR037188 -
Eupl13g01333 357 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Eupl13g01333 357 FunFam SBDS, ribosome maturation factor 3 96 - -
Eupl13g01333 357 MobiDBLite consensus disorder prediction 250 272 - -
Eupl13g01333 357 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Eupl13g01333 357 Gene3D - 174 250 - -
Eupl13g01333 357 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Eupl13g01333 357 NCBIfam ribosome assembly factor SBDS 13 222 IPR002140 GO:0042256
Eupl13g01333 357 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Eupl13g01333 357 FunFam SBDS, ribosome maturation factor 100 172 - -
Eupl13g01333 357 SUPERFAMILY beta-beta-alpha zinc fingers 286 327 IPR036236 -
Eupl13g01333 357 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
Eupl13g01333 357 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Eupl13g01333 357 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g01333 27 357 C2H2 Transcription Factor Family AT1G43860 66.860 1.66e-168 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g01333 K14574 - ming:122072207 621.313